RnoEX0029644 @ rn6
Exon Skipping
Gene
ENSRNOG00000030547 | Dpp6
Description
dipeptidyl peptidase like 6 [Source:RGD Symbol;Acc:68402]
Coordinates
chr4:4346625-4473307:-
Coord C1 exon
chr4:4472869-4473307
Coord A exon
chr4:4362498-4362612
Coord C2 exon
chr4:4346625-4346723
Length
115 bp
Sequences
Splice sites
3' ss Seq
TCTTCCTGTGGTTATTTCAGGAG
3' ss Score
7.98
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
CATGCGCCTTTGCGCGGCCGCGGCCAGGAGGCGGTGGGGAAGCAGCACGCATCACTCGGCCCCTGCCTGCACCCAGCCGCCAGTTGCCGGTTGCTAAGCAGTTATTGTTTCTGTGGCGATTGCAGAGGCTGTGGCTAATTGGAGAAGCCCCACTGAGCAGCAGCGTCTTCTTCTGCCGAGCCCGTCTCTGCTCTTTGCATTTAAAGAGCAAACTAGGCTGCTCTCCCCAGCTCCCTCCCCCCACCGCCCCCCAAAAACCTGGTCATTTTGGAAGTATGGACTAAAATCGCTCTCCTCCTCACCCTACCATTCCGATCCCGGTGCCTCCAAAGTCACAGTCAGACCCCTCCTGTGTCTGGGGTGGCGAGTGCCCGGACAGACCATGACCACCGCCAAGGAGCCCAGCGCCTCAGGAAAATCTGTACAGCAGCAGGATCAG
Seq A exon
GAGCTGGTGGGGAGTAATCCTCCACAGAGAAACTGGAAAGGAATCGCCATTGCACTGCTTGTCATCCTTGTCATCTGCTCCCTGATTGTCACCTCAGTCATCCTGCTGACCCCAG
Seq C2 exon
CGGAAGATACCAGTCTGTCTCAGAAGAAGAAGGTGACTGTGGAAGATCTTTTCAGTGAAGACTTCAAAATCCATGACCCAGAGGCAAAGTGGATAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030547-'0-12,'0-6,8-12
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.968 A=0.108 C2=0.000
Domain overlap (PFAM):
C1:
PF059157=DUF872=PU(23.3=89.5)
A:
PF059157=DUF872=FE(52.1=100)
C2:
PF059157=DUF872=PD(21.9=47.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCGCTCTCCTCCTCACCC
R:
CACTTTGCCTCTGGGTCATGG
Band lengths:
247-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]