HsaEX6011438 @ hg19
Exon Skipping
Gene
ENSG00000130226 | DPP6
Description
dipeptidyl-peptidase 6 [Source:HGNC Symbol;Acc:3010]
Coordinates
chr7:154002195-154172122:+
Coord C1 exon
chr7:154002195-154002636
Coord A exon
chr7:154143299-154143413
Coord C2 exon
chr7:154172024-154172122
Length
115 bp
Sequences
Splice sites
3' ss Seq
TTTGTTGTTGCTGTTTTTAGGAG
3' ss Score
9.24
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
TGCGCCGTGGGCGCCGGGCCGGGAGGCGGGCGAGGAGGCAGCGCGCATCACTCGGGTCCCCTTCCTGCACCCAGCCGCCACTTGCCGGTTGCTAAGCAGTTATCATTGTTTCTGTGGCGATTGCAGAGGCTGTTGCTAATTGGAGAAGCCCCACTAAGCAGCGGCAGCTTCCTGCTTCGGATCCTCTCTCTGCTGCTTGCATTTAAAGAGCAAACTCGTCTTGTCTACCCACCCTCCCTCCCCCATCCTCCCCAAAATAGCCTTGTGATTTCGGAAGTATGGACTAAAATCACACTCCTCCTTACCTTACCGCTTGGACTCTGGTGGCTCCCAACTCGCCGTCAGACCCCACCTGCCCCGGTGGTGGGAAGCGCCTGGACAGACCATGACCACAGCCAAGGAGCCAAGCGCTTCGGGGAAATCCGTGCAGCAGCAGGAACAG
Seq A exon
GAGCTGGTGGGGAGTAACCCTCCGCAGAGGAATTGGAAAGGAATAGCAATTGCACTGCTTGTCATTCTGGTCATCTGCTCCTTGATCGTCACCTCGGTCATACTTCTGACACCAG
Seq C2 exon
CGGAAGATAATAGTCTGTCTCAAAAGAAGAAGGTCACTGTAGAAGATCTCTTCAGTGAAGACTTCAAAATTCATGACCCCGAGGCTAAGTGGATAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130226-'2-7,'2-6,3-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.138 C2=0.000
Domain overlap (PFAM):
C1:
PF059157=DUF872=PU(22.9=84.2)
A:
PF118373=DUF3357=FE(50.7=100),PF118073=DUF3328=PU(26.8=87.2),PF059157=DUF872=FE(55.1=100)
C2:
PF118373=DUF3357=PD(26.7=58.8),PF118073=DUF3328=FE(26.0=100),PF059157=DUF872=PD(20.3=41.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCTCCTTACCTTACCGCT
R:
TATCCACTTAGCCTCGGGGTC
Band lengths:
244-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)