HsaEX6011438 @ hg38
Exon Skipping
Gene
ENSG00000130226 | DPP6
Description
dipeptidyl peptidase like 6 [Source:HGNC Symbol;Acc:HGNC:3010]
Coordinates
chr7:153887097-154475037:+
Coord C1 exon
chr7:153887097-153887734
Coord A exon
chr7:154446214-154446328
Coord C2 exon
chr7:154474939-154475037
Length
115 bp
Sequences
Splice sites
3' ss Seq
TTTGTTGTTGCTGTTTTTAGGAG
3' ss Score
9.24
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
AGCCGGGGCCGAGCCGCCGGCGTCCCCGAGTGCGCCCCCTGTGCGTGCCGCCGCGCTGTTGCTCGCAGTGTGCTGGCGCCGAGCTCGGTGGACACGCGCGCAGTCAGAGCTGCCTCTCGCCCTCGCTAGCTGGGCTCGCAGCCTCTTCCTCCCTCCCTGGCTCCTGGCTTTTTGTTTAAAGCAACACCCACCCTCCATCCAGGCTTTTTTTCTTTCTTTCTTTATTGGTAGCGGCCAAAAAGAGTTGATTGCTATTGGGATCCGCTGAGTAAAGACACGGGCAGGGGTGCGCGGAGGTGAGAAAACTGAAGACCTGGAAGATTTTTTTTTCCTTCAAAAACCCGTTTCCATCCAGTCTTCAGCCAGTCCAGTCTACTTTAATCCTCACCAGGACAATGGATTAAGTTTCTCTTCCCTGGACCAGAAGTCGGGTTCGGACTTGGGGCAAAATGAAGGAAAAGGCCATGATCAAGACCGCTAAGATGCAGGGGAACGTGATG
Seq A exon
GAGCTGGTGGGGAGTAACCCTCCGCAGAGGAATTGGAAAGGAATAGCAATTGCACTGCTTGTCATTCTGGTCATCTGCTCCTTGATCGTCACCTCGGTCATACTTCTGACACCAG
Seq C2 exon
CGGAAGATAATAGTCTGTCTCAAAAGAAGAAGGTCACTGTAGAAGATCTCTTCAGTGAAGACTTCAAAATTCATGACCCCGAGGCTAAGTGGATAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130226-'0-30,'0-27,16-30
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.131 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF059157=DUF872=FE(53.5=100)
C2:
PF0093016=DPPIV_N=PU(1.4=14.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATCCAGTCTTCAGCCAGT
R:
ACTTAGCCTCGGGGTCATGAA
Band lengths:
244-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains