MmuEX6016499 @ mm9
Exon Skipping
Gene
ENSMUSG00000061576 | Dpp6
Description
dipeptidylpeptidase 6 [Source:MGI Symbol;Acc:MGI:94921]
Coordinates
chr5:27143743-27725552:+
Coord C1 exon
chr5:27143743-27144658
Coord A exon
chr5:27709295-27709409
Coord C2 exon
chr5:27725454-27725552
Length
115 bp
Sequences
Splice sites
3' ss Seq
TCTTCCTGTGGTTGTTTCAGGAG
3' ss Score
9.39
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
CCAGCGCTGATCCCTGGGGTCCGGGCCGCGTGGCTTCGGCGGGTGGCGCGTGTGTGCGCGCCGCTGTGGTGGCTTCCCCGCCCTTGGCGCAGGGCAGGGCTGCGAGGACATCCCGCACTCCACACCCAGTTTCTTGGTCCTCTTCGAGTCCTCTTGGAGCTGCTCCCACTTCTGGTTTGGACAGACTTGGACTGTTTCCCAGCGAGGCAGCCCTGGGCAGAGCGCCCTCAGAGCGCCTGGCGTCGGCCGGGGCACCCTTCCGGGTGCGAGCAGCTGCTCTTTGGGCTCTGGGTTTCGGACCTTAGGGCTTTGGGAGAGGGGGTTCAAAGAAGCTTGGAGTACAGGTCCCAGAGAATCTCCCCTGAGGCGCGCATCTGTGTTGCCAGCCTCCACGCGCGCAGGAAGTTTGCAAGGATCCGGACCCCCAACTTCTTGTGGACATGAATCAAACAGCCGGAGCTTCCAACAACGTCAGGTGTCCTCCAGGGAAAGGCCATAAG
Seq A exon
GAGCTGGTGGGGAGTAATCCTCCACAGAGGAACTGGAAAGGAATCGCCATTGCGCTGCTCGTCATCCTTGTCATCTGCTCTCTGATTGTCACCTCAGTCATCCTGTTGACCCCAG
Seq C2 exon
CGGAAGATACCAGTCTGTCTCAGAAGAAAAAAGTGACTGTGGAAGATCTCTTCAGTGAAGACTTCAAAATCCATGACCCAGAGGCAAAGTGGATAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061576-'0-10,'0-9,7-10=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.969 A=0.138 C2=0.000
Domain overlap (PFAM):
C1:
PF059157=DUF872=PU(22.9=80.0)
A:
PF059157=DUF872=FE(54.3=100)
C2:
PF059157=DUF872=PD(20.0=41.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGAGAATCTCCCCTGAGG
R:
CACTTTGCCTCTGGGTCATGG
Band lengths:
245-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: