MmuEX6016499 @ mm10
Exon Skipping
Gene
ENSMUSG00000061576 | Dpp6
Description
dipeptidylpeptidase 6 [Source:MGI Symbol;Acc:MGI:94921]
Coordinates
chr5:27049199-27399012:+
Coord C1 exon
chr5:27049199-27049813
Coord A exon
chr5:27382755-27382869
Coord C2 exon
chr5:27398914-27399012
Length
115 bp
Sequences
Splice sites
3' ss Seq
TCTTCCTGTGGTTGTTTCAGGAG
3' ss Score
9.39
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
AAAAGCAGAAAGAGAAAGCGATCACTCCGACCCTTGGCTTCTGCGCTGCCGGGGAGGGGGCGGAGAAGCTGAGCCAGGCAGAGTCGCTCAACACCCAGGCGATTCGACTCGCGTGTGGCGCGGAGCGGCCGGGCTCGCCTTTCTTCTTTCCCCACCGCCTCCTTTTCCCCCTTCTCGCTTTTCTGCTGGAGGGGGTGGGGAGTGGAAAGAGAGACAGAGAGAAAGGAAATTTTTTTACGAAGCATCCTAACCAGTGAGCCAGCGCACGGCGGCCCATGGCTTCGCTGTACCAAAGGTTCACCGGCAAGATCAACACCTCGCGCTCCTTTCCGGCGCCCCCGGAGGCCAGTCGCCTTCTGGGTGGCCAGGGGCCCGAGGAGGACGCGGGCCCGAAGCCCCTTGGGCCGCAGGCGCAGGCGGTGGCGCCCAGGGAGCGCGGCGGTGCTGGTGGCCGGCCCCGGTTCCAGTACCAGGCGCGGAGCGACTGTGACGAGGAGGAC
Seq A exon
GAGCTGGTGGGGAGTAATCCTCCACAGAGGAACTGGAAAGGAATCGCCATTGCGCTGCTCGTCATCCTTGTCATCTGCTCTCTGATTGTCACCTCAGTCATCCTGTTGACCCCAG
Seq C2 exon
CGGAAGATACCAGTCTGTCTCAGAAGAAAAAAGTGACTGTGGAAGATCTCTTCAGTGAAGACTTCAAAATCCATGACCCAGAGGCAAAGTGGATAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061576-'4-19,'4-18,13-19
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.760 A=0.132 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCTTCGCTGTACCAAAGG
R:
TGAGACAGACTGGTATCTTCCG
Band lengths:
247-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types