BtaEX6029689 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BMH9]
Coordinates
chr4:117153120-117333549:+
Coord C1 exon
chr4:117153120-117153307
Coord A exon
chr4:117307385-117307499
Coord C2 exon
chr4:117333451-117333549
Length
115 bp
Sequences
Splice sites
3' ss Seq
CTTTTGTGCTGTCGTTTCAGGAG
3' ss Score
9.68
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
AGCAGCCGTGGGCTCTGGGAAGTATGGACTAAGCCCCAGTCCTCCGGCCGGCTGGACTCTGGGGGCCCCGAAGTCCTCCCGCTCAGACCGCACCTGCCGCTGAGCCGGCGTGCACCCTGAAGCAGGGGACCATGACCACAGCCAAGGAGCCCAACGCTTCGGGGAAATCCGTGCAACAGCAGGAGCAG
Seq A exon
GAGCTCGTGGGGAGTAACCCTCCACAAAGAAACTGGAAAGGAATAGCCATCGCGCTGCTTGTCATCCTGGTCATCTGCTCCTTGATTGTCACCTCGGTGATACTGCTGACACCAG
Seq C2 exon
CGGAAGATAACAGTCTGTCTCAAAAGAAGAAGGTGACTGTGGAAGACCTCTTCAGTGAAGATTTCAAAATCCACGACCCCGAGGCTAAGTGGATAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047979-'0-3,'0-0,4-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.128 C2=0.000
Domain overlap (PFAM):
C1:
PF059157=DUF872=PU(22.5=84.2)
A:
PF059157=DUF872=FE(53.5=100)
C2:
PF059157=DUF872=PD(21.1=44.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAAGTATGGACTAAGCCCCA
R:
CTCGGGGTCGTGGATTTTGAA
Band lengths:
255-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]