DreEX0028206 @ danRer10
Exon Skipping
Gene
ENSDARG00000024744 | dpp6b
Description
dipeptidyl-peptidase 6b [Source:ZFIN;Acc:ZDB-GENE-070705-88]
Coordinates
chr2:12813664-12949975:-
Coord C1 exon
chr2:12949714-12949975
Coord A exon
chr2:12819595-12819709
Coord C2 exon
chr2:12813664-12813762
Length
115 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTGTGTTTTTGACAGGAG
3' ss Score
9.2
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
AACACATTCAAGAAGAGCAGCCGATGAGACAGCTCGCGCTTTGAGATGCTTTAGTGATTTTACCGGACCCATGGCTTCGCTTTACCAGAGATTCTCGGGGAAAATTAATACCAACAAATCTTTTCCCCATCCACCTGAAGCCAGTCATCTCCTGGGTGGACAGGTTCCCGAGGAGGAGAATAAATCTGGGAAGAGTCCTCATCACCCCTCATGCCGACCTCCGGTCCAGAACCGCAAGAAAAACGCTAGCGAGGATGAAGAC
Seq A exon
GAGTTGGTTGGGGGTAGTGCTCCACAGAGAAACTGGAAAGGGATAGCCATTGCCCTGCTGGTCATCCTGGTCATCTGCTCTCTGATCGTCACCTCTGTCATCCTGCTAACACCCG
Seq C2 exon
TTGAAGATACCAGCCTGGCCTCCAAGCAGAAGGTCACAATCGAGGACATCTTCAGCGGCAAGCTCCAGGCACACAACCCTCAGGCAACGTGGCTCAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000024744-'0-2,'0-1,4-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.781 A=0.154 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGGCTTCGCTTTACCAGA
R:
CTTGCCGCTGAAGATGTCCTC
Band lengths:
256-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]