RnoEX0029627 @ rn6
Exon Skipping
Gene
ENSRNOG00000002595 | Dpp10
Description
dipeptidylpeptidase 10 [Source:RGD Symbol;Acc:1306427]
Coordinates
chr13:40105251-40300878:-
Coord C1 exon
chr13:40299978-40300878
Coord A exon
chr13:40143094-40143208
Coord C2 exon
chr13:40105251-40105346
Length
115 bp
Sequences
Splice sites
3' ss Seq
CACCTTCTTGGTCTCTGCAGGAA
3' ss Score
10.59
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
AGTCCGAGGATCTGCTGTAGTCGAAAAGAGGGATCCTGCAAAAAGGGGAGCCTGCTTGCCTCTGCCGACACTCTCCGTCCCCTCCCTGGCGCTCCCCACCCCCCTCCCACCGCTGCCGCCGCTCTTCCCTTCCGCCAATTCCGAGAGCGACGGGGCGTCTGTGACATGCGATCGCTTGCCAAGTGACGGTCCCCGAGTGTGAAGTGCCCGCGAGGAAGTGTGAGCTCCGACGCGGGCGGCGAGGGGATGACAGCCATGAAGCAGGAGCAGCAACCCACCCCTGGGGCCCCACCGCTGCCGCCGCTCTTCCCTTCCGCCAATTCCGAGAGCGACGGGGCGTCTGTGACATGCGATCGCTTGCCAAGTGACGGTCCCCGAGTGTGAAGTGCCCGCGAGGAAGTGTGAGCTCCGACGCGGGCGGCGAGGGGATGACAGCCATGAAGCAGGAGCAGCAACCCACCCCTGGGGCCAGGGCAACCCAGTCGCAGCCAGCGGACCAG
Seq A exon
GAACTGGGAAGTAACAGCCCTCCCCAAAGAAACTGGAAAGGAATTGCCATTGCTCTACTGGTGATCTTGGTAGTATGCTCCCTCATCACAATGTCTGTCATCCTGTTAACACCAG
Seq C2 exon
ATGAGCTAACAAATTCTTCAGAAACAAGACTGTCACTAGAGGAGCTTTTGGGAAAAGGGTTTGGACTTCATAATCCAGAAGCTCGATGGATCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002595_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTCCCTTCCGCCAATTCC
R:
ACCCTTTTCCCAAAAGCTCCT
Band lengths:
257-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]