HsaEX0020821 @ hg19
Exon Skipping
Gene
ENSG00000175497 | DPP10
Description
dipeptidyl-peptidase 10 (non-functional) [Source:HGNC Symbol;Acc:20823]
Coordinates
chr2:115919179-116101488:+
Coord C1 exon
chr2:115919179-115919605
Coord A exon
chr2:116066815-116066929
Coord C2 exon
chr2:116101393-116101488
Length
115 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTCTATCTCGGTAGGAA
3' ss Score
10.34
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
AAGAAGGCACGAGGCGTCGCCGCAGCTCGGTCAGGGGCCGGGGCCCCGCCGCTCGCCGCTGCACTAACTTGCCGCTTGGTCTCGCCTCGCCGCCGCGGCTCGCTGCGCTTTGGGTGGCGGGGGGCGGGGAGAGCGGGGAGTCAGAGGGTCTGCGGTGGCCGAGGGAGGGACCCTACGACGGGGAGCCCGCCCGGTGCCGCTCTTCTTCCCCTCCCCGCCCCTCCGCTCCCCCCACCCCGTCCCTTCCGCCGATTCCGGGAGCGACGGGCGCCCGTGACCTGCGAACGCTGCCAAGTGACGGTCCCCGAGTCTGAAGCGCCCGCGAGGAAGCGAGCGCCAGCGCGGGCCGCCGGCGATGACGGCCGCGAAGCAGGAGCCGCAGCCCACCCCGGGGGCCAGGGCGAGCCAGGCGCAGCCGGCGGACCAG
Seq A exon
GAACTGGGAAGTAACAGCCCTCCACAGAGAAACTGGAAGGGAATTGCTATTGCTCTGCTGGTGATTTTAGTTGTATGCTCACTCATCACTATGTCAGTCATCCTCTTAACCCCAG
Seq C2 exon
ATGAACTCACAAATTCGTCAGAAACCAGATTGTCTTTGGAAGACCTCTTTAGGAAAGACTTTGTGCTTCACGATCCAGAGGCTCGGTGGATCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175497-'8-15,'8-14,11-15
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.125 C2=0.007
Domain overlap (PFAM):
C1:
NO
A:
PF059157=DUF872=FE(66.7=100)
C2:
PF059157=DUF872=PD(17.1=36.4),PF0308811=Str_synth=PU(13.2=27.3)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAACGCTGCCAAGTGACG
R:
CATTGATCCACCGAGCCTCTG
Band lengths:
242-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)