HsaEX0020821 @ hg38
Exon Skipping
Gene
ENSG00000175497 | DPP10
Description
dipeptidyl peptidase like 10 [Source:HGNC Symbol;Acc:HGNC:20823]
Coordinates
chr2:115162157-115343912:+
Coord C1 exon
chr2:115162157-115162272
Coord A exon
chr2:115309239-115309353
Coord C2 exon
chr2:115343817-115343912
Length
115 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTCTATCTCGGTAGGAA
3' ss Score
10.34
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
TTCCAGGCTCTCCTGCTTCTCCACGGACTCTGCGGGAAGTTAGAGCCTCTGCGTGCGCTCCGGGGCCCGGCGAGAGGATGCGCAAGGTGGAGAGCCGCGGGGAAGGGGGCAGAGAG
Seq A exon
GAACTGGGAAGTAACAGCCCTCCACAGAGAAACTGGAAGGGAATTGCTATTGCTCTGCTGGTGATTTTAGTTGTATGCTCACTCATCACTATGTCAGTCATCCTCTTAACCCCAG
Seq C2 exon
ATGAACTCACAAATTCGTCAGAAACCAGATTGTCTTTGGAAGACCTCTTTAGGAAAGACTTTGTGCTTCACGATCCAGAGGCTCGGTGGATCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175497_MULTIEX3-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.101 C2=0.005
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCCTGCTTCTCCACGGA
R:
CATTGATCCACCGAGCCTCTG
Band lengths:
205-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development