MmuEX6026982 @ mm9
Exon Skipping
Gene
ENSMUSG00000036815 | Dpp10
Description
dipeptidylpeptidase 10 [Source:MGI Symbol;Acc:MGI:2442409]
Coordinates
chr1:125750743-125942136:-
Coord C1 exon
chr1:125941949-125942136
Coord A exon
chr1:125801639-125801753
Coord C2 exon
chr1:125750743-125750838
Length
115 bp
Sequences
Splice sites
3' ss Seq
CTCCTTCTCTGTCTCTGCAGGAA
3' ss Score
13.09
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
TCCGCCAATTCCGAGAGCGACGGGGCGTCTGTGACATGCGATCGCTTGCCAAGTGACGGTCCCCGAGTGTGAAGTGCCCGCGAGGAAGTGTGAGCTCCGACGCGGGCGGCAAGGGGATGACAGCCATGAAGCAGGAGCAGCAACCCACCCCAGGGGCCAGGGCAACCCAGTCGCAGCCAGCCGACCAG
Seq A exon
GAACTAGGAAGTAACAGCCCTCCACAAAGAAACTGGAAGGGAATCGCCATTGCCCTGCTGGTGATCTTGGTGGTATGCTCACTCATCACAATGTCTGTCATCCTGTTAACACCAG
Seq C2 exon
ATGAACTAACAAATTCTTCAGAAACAAGACTGTCACTAGAGGAGCTTTTGGGGAAAGGATTCGGACTTCATAATCCAGAACCTCGGTGGATCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036815-'0-3,'0-2,3-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.190 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGTGACATGCGATCGCTT
R:
TTGATCCACCGAGGTTCTGGA
Band lengths:
256-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: