GgaEX1031359 @ galGal3
Exon Skipping
Gene
ENSGALG00000002451 | KCNT2
Description
NA
Coordinates
chr8:2800388-2809586:+
Coord C1 exon
chr8:2800388-2800522
Coord A exon
chr8:2804202-2804313
Coord C2 exon
chr8:2809485-2809586
Length
112 bp
Sequences
Splice sites
3' ss Seq
AACATTCTTTTAAAATACAGGTT
3' ss Score
5.83
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
CCTAGATGACTTATTAAGATGTGGGGTCACCTTTGCAGCTAATATGGTGGTGGTGGACAAAGAAAGTACAATGAGTGCTGAGGAAGACTACATGGCAGATGCTAAGACTATTGTAAACGTTCAAACACTCTTCAG
Seq A exon
GTTGTTCTCAAGCCTAAGCATTATCACAGAACTAACTCACCCTGCCAATATGAGATTCATGCAATTCAGAGCCAAAGACTGCTATTCTCTTGCTCTATCCAAATTGGAAAAG
Seq C2 exon
AAAGAACGGGAGAAGGGATCTAATTTAGCATTTATGTTTCGACTGCCCTTTGCTGCTGGCAGGGTTTTCAGCATCAGTATGTTGGACACACTGCTGTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002451-'36-40,'36-39,37-40=AN
Average complexity
A_C1
Mappability confidence:
88%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTAGATGACTTATTAAGATGTGGGG
R:
GGTACAGCAGTGTGTCCAACA
Band lengths:
235-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]