RnoEX0046238 @ rn6
Exon Skipping
Gene
ENSRNOG00000013312 | Kcnt2
Description
potassium sodium-activated channel subfamily T member 2 [Source:RGD Symbol;Acc:735074]
Coordinates
chr13:57429546-57458413:+
Coord C1 exon
chr13:57429546-57429680
Coord A exon
chr13:57447578-57447689
Coord C2 exon
chr13:57458312-57458413
Length
112 bp
Sequences
Splice sites
3' ss Seq
GTGATTTTTCTTTAATTTAGGTT
3' ss Score
10.34
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
CCTAGATGATTTGCTCAGGTGTGGAGTGACCTTCGCTGCCAACATGGTGGTTGTGGACAAAGAAAGCACCATGAGTGCAGAGGAAGACTACATGGCAGATGCCAAGACGATTGTGAATGTGCAGACTCTTTTCAG
Seq A exon
GTTGTTTTCGAGTCTCAGTATTATCACTGAGCTTACTCATCCAGCAAATATGAGATTCATGCAATTCAGAGCCAAGGACTGTTACTCTCTTGCACTTTCAAAACTGGAAAAG
Seq C2 exon
AAAGAGCGAGAACGAGGTTCTAACCTGGCCTTCATGTTCCGACTGCCTTTCGCTGCGGGGAGAGTGTTCAGCATCAGTATGCTGGACACGCTGCTTTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013312-'32-38,'32-37,34-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTAGATGATTTGCTCAGGTGTGG
R:
GATAAAGCAGCGTGTCCAGCA
Band lengths:
235-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]