BtaEX6047084 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018975 | KCNT1
Description
potassium channel, sodium activated subfamily T, member 1 [Source:HGNC Symbol;Acc:HGNC:18865]
Coordinates
chr11:103426931-103430739:+
Coord C1 exon
chr11:103426931-103427065
Coord A exon
chr11:103427164-103427275
Coord C2 exon
chr11:103430638-103430739
Length
112 bp
Sequences
Splice sites
3' ss Seq
ACCAGGACCGCCCGCCCCAGGCT
3' ss Score
1.2
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CCTGGACAGCCTGCTGCGGTGCGGTGTCATCTACGCGGACAATCTGGTGGTGGCAGACAAGGAGAGCACCATGAGCGCTGAGGAGGACTACATGGCCGACGCAAAGACCATCGTCAATGTGCAGACCATGTTCCG
Seq A exon
GCTCTTCCCCAGTCTCAGCATCACCACCGAGCTCACCCACCCGTCCAACATGCGGTTCATGCAGTTTCGCGCCAAGGACAGCTACTCTCTGGCTCTCTCTAAACTGGAGAAG
Seq C2 exon
AGGGAGCGTGAGAACGGCTCCAACCTGGCCTTCATGTTCCGCCTGCCCTTCGCCGCCGGCCGCGTCTTCAGCATCAGCATGCTGGACACACTGCTGTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018975-'34-34,'34-30,35-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGTGCGGTGTCATCTAC
R:
TACAGCAGTGTGTCCAGCATG
Band lengths:
218-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]