GgaEX1056937 @ galGal4
Exon Skipping
Gene
ENSGALG00000001645 | Segment
Description
Potassium channel subfamily T member 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8QFV0]
Coordinates
chr17:8217980-8219163:-
Coord C1 exon
chr17:8219029-8219163
Coord A exon
chr17:8218638-8218749
Coord C2 exon
chr17:8217980-8218081
Length
112 bp
Sequences
Splice sites
3' ss Seq
AACATCTCTTCCCATTGCAGGCT
3' ss Score
10.18
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
CCTGGACAGCCTGCTGCAGTGCGGCATCATCTACGCCGACAACCTGGTGGTCGTGGACAAGGAGAGCACCATGAGTGCTGAGGAGGACTACATGGCGGATGCAAAGACGATTGTCAACGTCCAGACCATGTTCAG
Seq A exon
GCTCTTTCCCAGCCTCAGCATCATCACAGAGCTGACCCATCCCTCCAACATGAGGTTCATGCAGTTCAGAGCAAAGGACAGCTACTCCTTAGCCCTTTCCAAGCTAGAGAAG
Seq C2 exon
AAAGAGCGCGAGAATGGCTCCAACCTGGCCTTCATGTTCCGCCTGCCCTTCGCTGCGGGGAGGGTCTTCAGCATCAGCATGCTGGACACGCTGCTCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001645-'26-31,'26-30,27-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGTGCGGCATCATCTAC
R:
TAGAGCAGCGTGTCCAGCAT
Band lengths:
220-332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]