RnoEX0046219 @ rn6
Exon Skipping
Gene
ENSRNOG00000017283 | Kcnt1
Description
potassium sodium-activated channel subfamily T member 1 [Source:RGD Symbol;Acc:621106]
Coordinates
chr3:3354976-3356770:+
Coord C1 exon
chr3:3354976-3355110
Coord A exon
chr3:3355483-3355594
Coord C2 exon
chr3:3356669-3356770
Length
112 bp
Sequences
Splice sites
3' ss Seq
CATGGTCATCCCTTCCTCAGGCT
3' ss Score
8.93
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
CCTGGACAGCTTGCTGCAGTGTGGCATCATCTATGCTGACAATCTGGTGGTGGTGGACAAGGAGAGTACCATGAGCGCTGAAGAGGACTACATGGCAGATGCCAAGACCATTGTCAACGTGCAGACCATGTTCAG
Seq A exon
GCTTTTCCCCAGTCTCAGCATCACCACGGAGCTCACGCACCCTTCCAACATGCGGTTCATGCAGTTCCGGGCCAAGGACAGCTACTCTCTGGCTCTTTCCAAACTTGAAAAG
Seq C2 exon
CAAGAACGGGAGAATGGCTCCAACCTGGCCTTCATGTTCCGCCTGCCATTTGCTGCTGGTCGGGTGTTTAGTATCAGCATGTTGGATACGCTGCTCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017283-'30-45,'30-44,31-45
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACAGCTTGCTGCAGTG
R:
GGTAGAGCAGCGTATCCAACA
Band lengths:
234-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]