DreEX0005334 @ danRer10
Exon Skipping
Gene
ENSDARG00000104868 | KCNT1 (2 of 2)
Description
potassium channel, sodium activated subfamily T, member 1 [Source:HGNC Symbol;Acc:HGNC:18865]
Coordinates
chr5:64888783-64891096:+
Coord C1 exon
chr5:64888783-64888917
Coord A exon
chr5:64889022-64889133
Coord C2 exon
chr5:64890995-64891096
Length
112 bp
Sequences
Splice sites
3' ss Seq
TCTGTCATTGTGTCTGCTAGGTT
3' ss Score
9.51
5' ss Seq
AAGGTCTCA
5' ss Score
-0.88
Exon sequences
Seq C1 exon
TTTGGATAACCTGCTGCAGTGTGGCATCATCTACGCTGATAACCTGGTGGTGGTGGATAAGGAGAGCACTATGAGCGCAGAGGAAGACTACATGGCAGACGCTAAAACCATAGTCAATGTGCAGACCATGTTCAG
Seq A exon
GTTGTTTCCTAGTCTCAGCATAATCACTGAGCTAACTCATCCGTCTAATATGAGGTTCATGCAGTTCCGTGCCAAAGACTGCTACTCCCTGGCTCTCTCCAAACTCGAAAAG
Seq C2 exon
ATAGAGCGAGATAAGGGATCGAATCTGGCGTTCATGTTCCGCCTGCCGTTCGCTGCAGGCAGAGTCTTCAGTATCAGCATGCTGGATACTCTGCTTTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104868_MULTIEX1-4/5=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATAACCTGCTGCAGTGTGG
R:
CTGGTAAAGCAGAGTATCCAGCA
Band lengths:
234-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]