MmuEX7000471 @ mm10
Exon Skipping
Gene
ENSMUSG00000052726 | Kcnt2
Description
potassium channel, subfamily T, member 2 [Source:MGI Symbol;Acc:MGI:3036273]
Coordinates
chr1:140533861-140570483:+
Coord C1 exon
chr1:140533861-140533995
Coord A exon
chr1:140552960-140553071
Coord C2 exon
chr1:140570382-140570483
Length
112 bp
Sequences
Splice sites
3' ss Seq
GCAATTTTTCTTTAATTTAGGTT
3' ss Score
9.02
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
CCTAGATGATTTGCTCAGGTGTGGAGTGACCTTTGCTGCCAACATGGTGGTGGTGGACAAAGAAAGCACCATGAGTGCAGAGGAAGACTACATGGCAGATGCCAAGACGATTGTGAATGTGCAGACTCTGTTCAG
Seq A exon
GTTGTTTTCAAGTCTCAGTATCATCACTGAGCTTACGCATCCAGCAAATATGAGATTCATGCAATTCAGAGCCAAGGATTGTTACTCTCTCGCGCTTTCAAAACTGGAAAAG
Seq C2 exon
AAAGAAAGAGAACGAGGTTCTAACTTGGCCTTTATGTTTCGACTGCCTTTTGCTGCGGGAAGAGTGTTCAGCATCAGTATGTTAGACACCCTTCTTTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052726-'34-46,'34-41,41-46=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGATTTGCTCAGGTGTGGA
R:
CTGATAAAGAAGGGTGTCTAACATAC
Band lengths:
234-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types