DreEX6082919 @ danRer10
Exon Skipping
Gene
ENSDARG00000079484 | kcnt1
Description
potassium channel, subfamily T, member 1 [Source:ZFIN;Acc:ZDB-GENE-091231-1]
Coordinates
chr21:4723496-4724433:-
Coord C1 exon
chr21:4724299-4724433
Coord A exon
chr21:4723681-4723792
Coord C2 exon
chr21:4723496-4723597
Length
112 bp
Sequences
Splice sites
3' ss Seq
CTGGTTTACCGTTTCTCCAGGTT
3' ss Score
8.74
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
CTTGGACAGCCTATTGCAGTGTGGCGTTCTGTATGCTGATAATCTAGTGGTTGTTGACAAAGAAAGCACGATGAGTGCAGAGGAAGACTATATGGCTGACGCTAAAACCATCGTCAATGTGCAAACCATGTTCAG
Seq A exon
GTTGTTTCCGAGTCTCAGTATAATCACAGAACTGACTCACCCGTCCAACATGAGATTCATGCAGTTCAGAGCGAAGGACTGCTACTCGCTCGCCCTGTCCAAACTAGAGAAG
Seq C2 exon
AAGGAACGTGACAAAGGCTCAAATCTGGCCTTCATGTTTCGCCTTCCCTTTGCTGCTGGCCGAGTCTTCAGTATCAGCATGCTGGACACACTCCTGTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079484-'25-30,'25-28,26-30=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACAGCCTATTGCAGTGTG
R:
GAGTGTGTCCAGCATGCTGAT
Band lengths:
226-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]