GgaEX1031639 @ galGal3
Exon Skipping
Gene
ENSGALG00000015538 | KIAA0232
Description
NA
Coordinates
chr4:82823042-82826784:+
Coord C1 exon
chr4:82823042-82823150
Coord A exon
chr4:82825136-82825233
Coord C2 exon
chr4:82826173-82826784
Length
98 bp
Sequences
Splice sites
3' ss Seq
CACTCCCCGCCCACCCTAAGAGT
3' ss Score
2.54
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
TTTCCTGTATTGAATACTGATCTGCAGAGAATGAGTGGCAGCCAGGAAAAGCAGTGCTGGTGGGAAAAGGCGCTCTATTCTCCCCTTTTTCCTGCGTCACAGTGTGAAG
Seq A exon
AGTGTTATACAAATGCCAAGGGAGAGAATGGTGTGGGAGAATTTGCAGATGTAAAGGAAATACCCAATGATGATGAACATCTTTTAGATTTTAACATG
Seq C2 exon
GTTTCTTCTGTTTATGAAGCAAGGTGTGCAGATGATATAAATGCTGAGGCAAAACCAAACGGCTTCAGGAAGAAGATCTACTCCAGTGACAGCTCCAGCTCTGAAGACACAGCTTCAGAAGGTGGCAGTGAATGGGCTGATCCGTGTGAGGAGGAGCTTTTTTCTCGAACTCAACTATAAAAACTGCAGAGTAGGACGGATGATTTAAAAGTAACGTGAGGTGGAAAACTATCCTTCTTGAGGGTCTGTAGCTCTAAAACAACAACTTGAGTTTCCTCTTCAGTTAATGGATTCAGATGTGTATTTATCTTTCTCTTCTTGCTTATTTTATAGATGAGGACACAGCTGTCCTGTTGAAGATTTTTTTCACCCCCAAACTGTTAAATTCTTGGCTATTTGAACTAGACTAGATTGTGTTGTTAAATCAAGAATGGATGTGCATGTGCTTGTCTTAGTAGTACCACTGCTTTTTTGCATCTTAATTGCAGTTATTTTCATTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015538-'8-11,'8-8,9-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.189 A=0.212 C2=0.390
Domain overlap (PFAM):
C1:
PF153761=DUF4603=PD(2.6=91.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTTTTCCTGCGTCACAGT
R:
CTCACACGGATCAGCCCATTC
Band lengths:
177-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]