HsaEX0033520 @ hg19
Exon Skipping
Gene
ENSG00000170871 | KIAA0232
Description
KIAA0232 [Source:HGNC Symbol;Acc:28992]
Coordinates
chr4:6873301-6885897:+
Coord C1 exon
chr4:6873301-6873409
Coord A exon
chr4:6878387-6878484
Coord C2 exon
chr4:6882514-6885897
Length
98 bp
Sequences
Splice sites
3' ss Seq
CTCCATTCCAAATGATTAAGAAT
3' ss Score
-0.09
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
TTCCCTGTATTGAACACTGATATACAAGGAATGAATAGAAGTCAAGAAAAACAGACCTGGTGGGAAAAAGCCTTGTACTCTCCTCTTTTTCCTGCATCAGAGTGTGAAG
Seq A exon
AATGTTACACAAATGCCAAGGGAGAGAGTGGTTTAGAAGAATATCCAGATGCTAAAGAGACACCCAGTAATGAAGAGCGCCTGTTAGATTTTAATAGG
Seq C2 exon
GTGTCTTCTGTTTATGAAGCAAGATGTACAGGAGAGAGAGATTCTGGAGCAAAGTCAGATGGCTTCCGCGGAAAGATGTGCTCCAGCGCCAGCTCCACCTCGGAAGAGACAGGCTCAGAAGGCGGAGGCGAGTGGGTGGGCCCTAGTGAAGAGGAGCTCTTTTCTCGAACTCATCTCTAAACCTGCAAAATAGTACAAATTATTGTTTAAAAATGATATGTGATGGAAAATTACTCTTCAGTGAGACCTGTTAATCTAAAACAACAACTTAGGTTTCCTCTTCAATTAACTGATTCAGATTGGTAATAATTATCTTTCTCTTCTTGCTTATTTTAGAGTTGAGGACAGCTATCCTGTTAAAGATTTTTTTTCCCAGCTGTTAAATTCTTGGCTATTTGAAATAGACTAGATTGTGTTGTCAAATCAAGAATGGGTGTGCATGTGCTTGTCTTAGAAGTATCACTGCTTTTTGCATCTTAACTGCAGTTAATTTTCCTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170871-'18-17,'18-16,19-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.270 A=0.545 C2=0.692
Domain overlap (PFAM):
C1:
PF153761=DUF4603=PD(2.7=91.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGTGGGAAAAAGCCTTGT
R:
TCTGAGCCTGTCTCTTCCGAG
Band lengths:
173-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)