BtaEX0019099 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019427 | KIAA0232
Description
KIAA0232 [Source:HGNC Symbol;Acc:HGNC:28992]
Coordinates
chr6:118171129-118178266:+
Coord C1 exon
chr6:118171129-118171240
Coord A exon
chr6:118175589-118175686
Coord C2 exon
chr6:118178087-118178266
Length
98 bp
Sequences
Splice sites
3' ss Seq
TCCATTCAAAATGATTTAAGAAT
3' ss Score
1.57
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
CAGTTCCCTGTACTGAACACTGACGTGCATGGAATGAACCGGAGTCAAGAGAGACAAACCTGGTGGGAAAAAGCCTTGTACTCGCCTCTCTTCCCCGCCTCGGAGTGTGAAG
Seq A exon
AATGTTATACAAATGCCAAGGGAGAGAATGGTATAGAAGAGTATCCAGATGTTAAAGAAATGCCCAGTAATGAAGAGCGTCTGTTAGATTTTAATAGG
Seq C2 exon
GTGTCTTCTGTTTATGAAGCGAGGTGCACAGCAGAGCAGGACGCCGGAGCCCAGCCCAACGGCTTCCACCGCACGCCGCGCTGCAGCGCCGGCTCCGCCGCGGAGGACTCCGGCTCGGAGGGTGGAGGCGAGTGGGCGGACCCCGGCGCGGAGGCGCTCTTCTCCCGGACTCATCTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019427_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.395 A=0.485 C2=0.797
Domain overlap (PFAM):
C1:
PF153761=DUF4603=PD(2.7=92.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTTGTACTCGCCTCTCTT
R:
CACTCGCCTCCACCCTCC
Band lengths:
175-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development