BtaINT0080664 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019427 | KIAA0232
Description
KIAA0232 [Source:HGNC Symbol;Acc:HGNC:28992]
Coordinates
chr6:118175589-118178266:+
Coord C1 exon
chr6:118175589-118175686
Coord A exon
chr6:118175687-118178086
Coord C2 exon
chr6:118178087-118178266
Length
2400 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
CCTTGTCCCTCTCCCCTCAGGTG
3' ss Score
13.54
Exon sequences
Seq C1 exon
AATGTTATACAAATGCCAAGGGAGAGAATGGTATAGAAGAGTATCCAGATGTTAAAGAAATGCCCAGTAATGAAGAGCGTCTGTTAGATTTTAATAGG
Seq A exon
GTAAGTGGACTGTCCTCCTCCTTACTACTAACTCGCAGTGGCCGCCAGCGCCCCGCACAACCCGGGAGTCTCGCGGCTGCCTCTCCCGTCACCGAGCTCTCGGCTGCGACCCTTTGGTCTGCCTCGCCTCCCACTCACTGCCAAGGCCTCCCGCCGCCCCCCTTCTCCTTGCAGTCCGTCCCTCACTCCTGCCAGAGCGTGTTTGCCCCACACACGTCTGACCCTGTGGTTCCCCCTTAAGATGCTTGGGTGGACACCCTTTCCATCTTTCAAAATGCGCAGCAGGAAGGAGCCCCTCCAGTCACACCTGCACCTCCCGGCCACCACCCCCCTTCCCAGGGGTGTGCCCTGCCCGCCCCCTGCCCCCATAGAGCTCCACTGTGGCCCCCCAGCAGCAGCTGAAGGCACCGTGTGTCCGCCGCCCCCCGCCTTCTGCCCTGCCCGAGCTCTTGGGGGGCCAGCTCAGGAAGGGCCCGGACCTCGCCTGGTTAAGCAGGCAGCTGAATAAATCCAAAGGAGCCCCTCTGGCTTCTCTGCGTGATTTGTCAGTGTCAGTGGAAGTCTGGTGAAAGTCGTCCGGCCCCCGCCCCCGCCCCAAGCGCCCCCGGGGTCTTTGTGTCCGTGGACCTGCTGGACTTAACGCATCAAGACAGGCGTCTGGGGCATCCCCAGCGTTCTCTGCATCCAGCTCCGTGACCGTTCTGACCCGACCGCCACCCCAGCTTCAGTCCCCAGACCGCCTGGCTGCTGGTCCCTCCTCCTCACCTCCGCACACAGCCGGTGTGCCCGTCCCGCGCACCCACCTTGCAGCCGACCGCAGTCCTCCGGGCTCCTCCGGGCTCTCCCGCCTCCACCGTTCACACTCCCCCGCCCCCTTCGCCGCCCCGCCCCGCTGCCGTGCGCTTCGCCGCGGGCTTCCTGCTTCCACTCGCCTCTCCACCCCCCAACAGTCTCTCTCACACCACAAGGCACAGCGGCCGCACTGTTACCTCACTCCGTCGCCCAGGAGGTGGGTGCTGTTCTGCCAGTCTGCAGACGAGAAAACTAAAGGCCCAGAAAGATTCTGAGGGCCTTCCCCGCTGGCTCAGGGGGTAAAGAACCCGCCTGCCAGGCAGGAGACGCAGGTTCAATCCTGGGTCGGGAAGATTCCCCCCCGGAGGAGGACACGGCAACCCACTCCAGTATCCTTGCCTGGAGAATCCTGTGGACAGAGGAGCGGGGGAAAGGCGGGGGCTTCAGTCCATGGGGTCACAGAGAGTCCAACACGACCGAGCACACACGAGCACAGATTTTCCAAACACGCCTCTGAAGTCGCACAGCCAGAGCCTGCGCGTCGACTGAGCCGTGCTCTCAGCCCCTGAGTTCAACGCCCCCGCCACTGACCGCGATATCCTTCCGCCCTTGTGCACGGAGTGGGTGCTCTCTCCCTGCCAGGCCTGTGTGTCCGCCCTCGCGCGCCTCTCTGCTCCCATGCCCTCCGCTCCCCGGTTGGTGTGGCAGTCTTTCTGTGCTCCTTCCTCGGGGGGCTCTCAACCACGGACAGTACTGCCATCTGGAGATGGGGGTGGGGGCGGGGTGGGTGTTTCTAAGCCACTGTGACTGGCGGGGGGGCATTGCTAGTTACTGTAGTAAGTACGGGGTGCTGGTCACCACGAGGGAGGGGCTTTTTGCTAGCCACTTGTTAGTTACTATGAATGAGGGGCACTGCTCATCATTGGGGGAACGGGAAGAATTACCCAGTCACTGTCAGGGGAGGGTGGCTTGGCTAATTAACCGTGATGCAGGGAAGCACTGCTGGGCACTGTGACGGGAGGGGCCACCACTTGCAGCTAGAGTCCCGAGGGCCGGGAAGTTGCCCGTCTGCTGGGTGGGGGGGCAGTCCCACACAGCCAAGAGTTTCTCTAAAACGTCCCCCATGCCAGTGGGCCCCCCATTCAGAAGCACTGCCCCCAGGGTCCCTGCCAGCTCTGCTTTTTCTGTGGCCCAGCTCTCTTCTCAGCACCTCCTTAAAAGAACTGCTGTCCCCGCCACTCCTGTCTGGACCCCTATCAGCGACCCCCTGCCCGCCCCAGCTGGTCGGCGCAGCAGGAAGCCGGGAGGAGTGTGGGTGGATCTGTCTGCTTGCTGTCCGCCCCTGGAATGGAGCCCCAGCAGGGCAAGGCGGCGCTCAGAGACTCCAGAGGGCGGGAACGTGGAGAATCAGGGTCCGGGGTCCTTTACAGGTCAGGAGGGAGAGCTTGTTCGTTTTGCTTTCAAACAGGAAAACTTCAAAGTCTGGTAACTCTCCACCGGAAAATATCCACCAACAGTGTGTTCCTTAATCTCTGTATGTGGAAGAAAGCGTCTCCCCGGCCCTTCTGTGGCCTTTCGAAAACTCGTTCCTTGTCCCTCTCCCCTCAG
Seq C2 exon
GTGTCTTCTGTTTATGAAGCGAGGTGCACAGCAGAGCAGGACGCCGGAGCCCAGCCCAACGGCTTCCACCGCACGCCGCGCTGCAGCGCCGGCTCCGCCGCGGAGGACTCCGGCTCGGAGGGTGGAGGCGAGTGGGCGGACCCCGGCGCGGAGGCGCTCTTCTCCCGGACTCATCTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019427:ENSBTAT00000025878:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.485 A=NA C2=0.797
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]