MmuINT0046101 @ mm10
Intron Retention
Gene
ENSMUSG00000029190 | D5Ertd579e
Description
DNA segment, Chr 5, ERATO Doi 579, expressed [Source:MGI Symbol;Acc:MGI:1261849]
Coordinates
chr5:36600485-36604608:-
Coord C1 exon
chr5:36604511-36604608
Coord A exon
chr5:36602804-36604510
Coord C2 exon
chr5:36600485-36602803
Length
1707 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
AATTGTTTCTTGAATTGTAGGTG
3' ss Score
7.98
Exon sequences
Seq C1 exon
AATGTTATACAAATGCCAAGGGAGAGAATGGTATAGAAGAATGTCCAGATGCTAAAGAGACACCCAGTCGTGAAGAGCGTCTGTTAGATTTTAATAGG
Seq A exon
GTAAGTGGACTGTCCTCCTCCCTTCCATTCTAGTCACACACTTGAGGGTCCTGTGACCCACCCCTGGCCCATGTTCCCAGATCCTGAGTGTTGCCTTTCTCCTCTTGGCCCTTTTTTTTGGATCTGCCTAACCCTAACCACAAGCCCCAACCATTTGCCAGACCTTCATGAACAGCCCCTAACGTCCCCACTGACACTACACTGCTGGCACAGGGGGTCTTAAATGCTGTACTAAGCTGTTGTTTCTTGTTCAGTCCTGGGCAGCATTTTCCTTCCAGTATACTTTTCCAACCTGTGTGGGACAGACCCTGTGCCCTTTCTGTGCTCTTGTGTACTCTCTGGGTGGAATCGCACCATCCCAGACACTTATGTCTCCCCAACATGCCTGTGAGTACCATGAAGGCATTCAAGACCTTGACCTACTTTTAGCTCAGACTCAAGCCTTCCACTGTTAGGCAAGTTAAGACCAGTGAATTGAAGGAAACCTGTTTTCTTCTCAGAGTTATCAATGTTAGCTCAAGCTCTGTAAGAATTTTCCAAAGCACCATATAGTGCTAATCCCACTGACTTACCAGTTTGTGTTAACATGTCCAAGCCCACATGTAAGGCCTCCCCATAGCCTTCCTCCCTCAGGGTCTCTCTTTACCTGTCTCTTCCTCTCACCTCTGCCCAGTGTCTGCCAGCCTGTTATTGTATCTCACCTCCACTTTCCATCCATTTCTTTATTCCACACCATCTTTTCCACTGCTACTCCTCAACAGCAGCCACAGCTTTTCTTGTCCTTGCGTCTGCTTGTCCTTGACAATTAGTGCCATTCTGCAAGACAGTGACCTAAAAACACCCCTGTGCACACTCATTCTTGGCACACTCATCTATTTGCAGAGTACAAAATGGAGGTATGTGGAGATGGAGCATAGGGCTGCGTACCCCAACAGTCTGGCTGTGGGATCCGTGCTCCCATGGCTGTGCACTTGGAAGGTTCCCTCCATGCCCGGAAGCCTTGTGTGCTTTGCTCTCACATAGCTTTTCTGTGTGTCCACCTTGAGCTCAGAAACAGGGACTGTGATGGGGTGATGCTAATGGTGGATATTGTGATGCACTGGGAAATAGTGTTAGTTGCTGTAACTGATGAAAGGGCTACCATTGCCGTCGAGTATTTTGGGGCTCCAGATGCCAGCCTTCCTATAAACACAAGAAGATGCTCTATACCACACTTGATGATCCTGGCACTGCTGTGCAGAGCACCAGCCGTTGCTCAGGAGTGCCACCTTCTGGAGCGCTCTGCCCCTGTTCAGAGTGCCCCTTAACCAGTATCCTCATGTCTATAGTATGAAGCTTTGTCCTTTGGTTTGTTTGTCTGCTGGAACTGTGAGCCCCTGTGCATTACCATGTCTGTTTACTTAGGGGAGCCTGGGCAACGCTTCATGGGCTACCCTGAACCAGGTATTCAAAGACTTGCTGAGAGTTAAGGAGTCCCATTGTCCTACCCTAGTGTGGCACATAGATTCTTGTGGCTAGATGTGCAGAATTAGGATTGGACCCTTCAAGGGCAAAGAAGAGATGCCTCTGAAACAGTGCGACTTCACGTTTTTATAGATTTCTATAGGAGATATCAGTGATTGCTACTTCATCTGTCTATGAATAGGATCAGCCTTTGGGGGGATTGTCTGATTTTTGGTGTATTGAAAATTGTTTCTTGAATTGTAG
Seq C2 exon
GTGTCTTCTGTTTATGAAGCAAGATGCACAGGAGAGAGAGGTTCTGAGACAAAACCAAATGGCCTCCACAGGAAGATGTGTTCCAGTGCCAGCTCTGACACGGGCGACACAGGCTCCGAAGCCGGCGGAGAGTGGGTGGGCCCCAGCAGAGAGGAGCTCTTCTCCCGAACACATCTCTGACCCTGCAGAGTAGTACCAGTCATTGAAAATGGCTGTGATGGGCAATTGCCTTGTGTGAGGCCTGTTAGTCTAAAGCAGCAACTTAGGTTTCTTCTTCAATTAACTGATCCACATCAGTGATTACCTTTCTCTTCTTGCTTATTTTAGCGTTGAGGACGGCTGTCCTGTTGAAGATTTGTTTCCAAGCTGTTAAGTTCTTGCTCTCTGAAGTAGACTAGACTGTGCTGTCCATGAGGAATGGGTGTGCATGTGCTTGTCCTAGTGCGTCCCGCTTCTGCATCGCAGCTGCAGGCCTCCCTCTGGCGGCTGTGTCGCCATCACCTTGTCAGCACCGTGGCGACAACCGCCACCGTCCAGAGACTCTAGCTCTGTTCTCTGAGCCAGGAGATCAGTCCTCCCCTGCAGTGGGTCAGGGCCTTGCTGAAGGAGGAGGGAAGCATGGTGACTCATCTGCAGGCTCATTCAGAAGATCTCATGGACATTGCTGTAGGAACACAAGGGTGTGCTTTAGAGACTTACAGAATACTGTGCTTTCTCTTAGGATTCCCCTAAAGTACCATGGAAGTTACTGTGGCTTGTGACTTTCTTGCTAGCTGAAGAAGCCAAGGATTTGAGGCCTGGGTTAGATGGGTGAGTTCTGCTACTGCAGTGTGTCCATAGCAGGCATAGTGGGGTTCTCTGAGCTGCCTCTCCAGTGCATAGTTGAGGACCTTACTTGTAAATTGTTATCTGGTGACGACACTGAACTTAATTCTCCAAGTGAACTTCAAAACATTGGACATGCAGTGAGGCCACCTCTTACCCCAAAGAAATCTTTGGCTGCTGCAGCTAGCTGCTCTCGTGGCTGTGATGTAGTGTAGCTTGTATCTCATTTTGTGTTTGAGAGAATGCTCTGGGCAAGTTCTGCTTGTGGGCTGGGGTTGGTAGAGGAACTTCCCACACACTTCCCTGTGTGATTGCTGTTCTGATTATCGACTCGTGGGACTTGGTGCAGCAGGCAGGCAGCAGGCCTCACACAGTTGCATCTAAGCGTGCTGATCACCTCGGATCTCTCTCGCAGCACTGCCACAGGTGCTAGTAGGGCCAATTGTGTAAAACCTAAACATCCAAAATGATTTTTCTCTTTTAACTAACTTGTTGTTTTTAAAAACACCTTGTCTGTGACATGAGCTCAGCATGTCCAGAACATCAGGAGTAGCGGAGAGGTCTTAAGTAGTTGAACTGGCCTCACCAGCAAGTGGGACGGCACTGGGCATGCGTGTGGCTTCTTAGCTGGGAGTGGAGCTGCCCCTCGGGCCTTGCTGGTAGTACTTGAGTTTGTTGCCTGTTTCTCAGGAACACAGGAAACACCGTGGAGCCTGTGCAGGCACTGTCGTTCTGGCTTGCTGGCTGGGGCCTCTTGCCATCTTAGGGTCTGTTTCATACAGCACATCCTGACACTGACAGTGGTGCGTGTGCGTGTGTGCATGTAGAAGGGTTCATGTTGCTCTTATTTATTTACAGGTATCAGATACATTTTATGTATTTTTTTCTTCTGGAGCTTCCTAAAATCTGATTAACATCTGCACTGAAATATAACCTATCATCAAAGGCAAAAAGGATTGGAAGTTGTAAATTCCTAAAATCAATGCCATCAAGATTACCCTAGAAATTGTTGCTATGACCAAATGGATTTCATACTCAGCCATGAGCTTGGGTGACCTGGACAGCCAATGTTTATCAGGAAAAGGCTCCAGGTGGCAAAGAAGCCTCCCTCCTCAGCTGTGGTTGTGGGGAGAGGCCCCCCACAGGGGATACGGTGGGTCATCAAAGGCAAAGGGATGACTAGATTCTGTATTTGGTTTCTTTTGTAGTAAGTGGCTGAAGCTCAGAGGCTTTGGTACAGAATTAAAGTGTGGTTTTAGTTTCTTGAATGGATGATCACAAAAAAAGCATTAAAAAAAGTTGGCAAACGCTGAAGCGCACTGTGGTATGAAGCGCGTTGCACATCCGTAGCACTGAAGTATCAGCTCCGTTCCTGGGCTGATTTTCCCCCCGTGGTTGTATTGTTCTGATTTCACGTACACCAGAGTAACTGATTTTTTTTTTGTTTTGTTTTGTTTTCTTGTGGAGTTAACACCAAATAAAAATTTCAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029190:ENSMUST00000031091:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.394 A=NA C2=0.795
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCCAAGGGAGAGAATGGT
R:
TGCTGCTTTAGACTAACAGGCC
Band lengths:
347-2054
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types