HsaINT0085673 @ hg19
Intron Retention
Gene
ENSG00000170871 | KIAA0232
Description
KIAA0232 [Source:HGNC Symbol;Acc:28992]
Coordinates
chr4:6878387-6885899:+
Coord C1 exon
chr4:6878387-6878484
Coord A exon
chr4:6878485-6882513
Coord C2 exon
chr4:6882514-6885899
Length
4029 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
GAAAATTGTTTTAATCTTAGGTG
3' ss Score
5.81
Exon sequences
Seq C1 exon
AATGTTACACAAATGCCAAGGGAGAGAGTGGTTTAGAAGAATATCCAGATGCTAAAGAGACACCCAGTAATGAAGAGCGCCTGTTAGATTTTAATAGG
Seq A exon
GTAAGTGGACTGTCCTCCTCCTCGTCATTAACTTACAAACAGCCACCACCTCCAGTTGTCACTGTAGTCAAAAACCTGGGAGTCATGTGAGTGGACCCCACCTCTCCCAGGAACCAGCCAGGCCTGTGGGTGCAGACTTCCTGTTCTCTGGCCTTTGTTCTGAGTCTGCATTCTCCCCCGCTTCCAAACCCCCTTGACTGTTGACTGCCAGTGCTTCCTGAAGAATCCCCAGCTCTCTCCCCAGTCTTGGCTCTACACTACTGCCCGAGGGCATTGCATTACAAATGCAGAGCTGACCCTGTTGCTCCTTGGGTGGGCACACTTTTCATCTTTTTTTTTTTTGTTTACCTAATAAGTGGGAGACCTAGCCTTGTCCTCTTTGAAAGTGCACCCTGAGGCAGCCTTGCCAGTGTGCTTGTTGCCGCTGTCCCGGCTTCTGCAGAACGATCCCGCCCTTTCCGTGTCCTCCTGCACTCTGTGCACGACTCTTCTTGCTGTAGCCAGAGCATGTACTTGCGTTCCGTTTCTGCATGTCTGCCTCTTCCACAAGCCTGTGGGCACCACGAAGGCGGGAGCGGGGCCTCCGCCTGGTTTAGTCTCGTCTTAGACCTTCCCCGGTTAAGAGGCAGGCAGGCAAATGAACCTAAGGAAAATTCTTTTTATTTGGTGTGAATTGTCAGTGTATTAGGGTTCTCCAGAGGGACAGAACTAATGGAATAGGTATATATATACACAAAGGGGAGTTTATTAAGTATTAACTCACACGATCACAAGGTCCCACAATAGGCCATCTGCAAGCTGAGGAGGAAGGAGAGCCAGTCCCAGTCCCAGTCCCAAAACTGAAGAACTTGGAGTCCGATGTTCGAGGGCAGGAAGCATCCAGCATGGGAGAAGATGTAGGCTGGGAGGCTAGGCCAGTCTAGTCTTTTCACATTTTTCTGCCTGCTTTATATTCTAGCCACGCTGGCAGCTGACTAGATGGTGCCCACCCAGATGAAGGGTGGGTCTGCCTTTCCCAGCCCACTGGATCAAATGTTAATCTCCTTTGGCAACACCCCCACAGACACACCCAGGATCAGTACTTTGCATCCTTTAATCCAATCAAGTTGACACTCAGTATTAACCATAACAAGTCCACCCCTTGTCAATTTGAACCCATACACATCTCCTGAAATTATATGTAATCTTCAAATAAAGACAATAAGGTCATAATTATACCTAACATAATACAGCTATGCTTCATACAACCGGAAAAGCACCAATCCCAAACCCAAGTACTATTACATAGAGTTAACAATACTTAAATGCTGATATGAAGTCAATAAATCTTATGTCAGCCGGGCGCTGTGGCTCACGCTTGTAATCCCATCATTTTGGAAGGCCAAGGTGGGCAGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGCGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCGGGCGTGATGGTGCACCCCTGTAATCCCAGCTACTTGGGAGGCTGAAGCTGGAGAATTGCTTGAACCCAGGAGGTAGAGATTGCAGTGAGCTGAGATCGCACCACTGCACTCCAGCCTGGGTGACAGAGCAAAACTCCATCATTCATTCATACATACATACATACATACATACATACATACATAAATATATACATACATAAATCTTGTGTCACATGATAAAGGACAAAAAATAAAATGAGATTTTCTTAGTACAAGTGTATACATGCACAAACGTGTTTTTAACGAAGGAGGAAATACTCCTCAAGACAATTACAGTCCTGGTTTCTGCACCTGGTCACATGGTCGTAGCTGGTATTGATGACTACCTTCTTCTACTACCCATTCTGTATTCCCTTTGCCTTCAGCAAGCACCTCAGCAGGTTGTGGTTTTTTCCCGGTGGAGTGACCTAAACCTTCATTCCTAAAGAGTCTGAGCCATTTGTATCCTGTCTGGACTGGGCTGTTGTAGTTTCCCGTTAACTTGAATCACACGGCATGTGATCAAGTTGACACTCAGTATTAACCATCTGTCAGTGTCCATTCAAGTCCTGTGAGAACTGTCTGCCCAAGCACCTGTAGCATCATCGTCCACGTCCTGCTGCCCACTGACCTGTCCGGCTCCACACATGAAGGCAGATGTTTGAGGCCCCCACCAGCTCTCTCCTCAGTGACTAGTTCACATCATCCCTCCAGCCTCAAACCCCAAACTGAGACATATTCCCCAGTCCTCTCTCTCATCTTCCACACACAGTCTGCCTGCCAGTCCTGACCGTTCCCCGCTGTCAGCCACTTCGCATCTCCCACTTCTCCTCCTCTCCATCATTACCACTTTGTTCAAGCCACTGTCCCTGCTCCTGAACAGCTGCCATGGTCTTTTCATTGTCCTTCCTGCTTTCGTCATCCTTTCCAGCCTTCTCTCCACACAGCAGACAGAATGACCTCACGAGCAGTATCTTGTTCAGTCCTCACAACGACCCTGTGAGGTAGGTACTGTTGTCATGCCTGTTCTGCAAAATAGGAAAGTGAAGCACAAAAACATCAGGCGCCGTGTATCCGAGGCCAGAGAGCCACAGCTTCAGTGTGGACCTGAACTCTGAACCTCAGCAGTCTGCCTCTAGGACCCATACTGCTAACCATGATGTCACTTTGCTGTTGCATTTGAGACAGATCCAAACTCCCCGCCACGCCTCTACAGCCCTGTATGTTTTGCCCCCGTCTGCCTTTGACCTCATCTGTCTCTGCTCTCCCCTTACTCTGTGTGGCTTTTCTGTGCTTCTGCCTCAGGGGTTCTCAACCAGGGGCAATGCTGCCATTTGGAAATGAGGTGGGAGTGCTGCTAGTTACTATGGCAGGGTGAGGGGAGCTTTGTAATGACTGTGACTGAGGAGGGGCCACCACTGCATCTCATGTCCTGGGGTCCAGAGATGCTGACCATCTGGTGTAGGGGAGACAGTCCGACACCACAGAGTGTTGGCACCTCTGCATGGCTGGCTTCTCAGCTGAGCGGGCCTCTTCTCCAAAGAACTCCCTTCCCAACACACCCATCTGCAGTGCCCCCCCTCACCATCTGTACTGTGTCACTGCAAACTCCCTTCCCAACACACAGGTCTGCAGTGTCCCCTCACCATCTGTACTGTGTCACTGCAAACTCCCTTCCCAACACACCCGTCTGCAGTGCCCCCTCACCATCTGTACTGTGTCACTGCAAACTCCCTTCCCAACACACAGGTCTGTAGTGTCGCCTCACCATCTGTACTGTGTCACTGCAAACTCCCTTCCCAACACAGAGGTCTGCAGTGTCCCCTCACCATCTGTACTGTGTCACTGCAAACTCCCTTCCCAACACACAGGTCTGTAGTGTCGCCTCACCATCTGTACTGTGTCACTGCAAACTCCCTTCCCAACACAGAGGTCTGCAGTGTCCCCTCACCATCTGTACTGTGTCACTGCAAACTCCCTTCCCAACACAGAGGTCTGCAGTGTCCCCTCACCATCTGTACTGTGTCACTGCAAACTCCCTTCCCAACACACAGGTCTGTAGTGTCGCCTCACCATCTGTACTGTGTCACTGCAAACTCCCTTCCCAACACACCCGTCTGCAGTGCCCCCCTCACCATCGGTACTGTGTCACTGCAACTGGCACATGTTGGTTTGCTCGTTCATCTCCCCAGCGAGCCTGGCATGCGCCTTCCACTGCTGGAGTCCCTGTGCCCAGTAAAGTTCCTGGTGCATAGCAGGTACTCAAAGACTTTGAAAATGAAATAATTCTTTATCCTACCCTAACATGGCTAACATTTTGTCCAAGTGACTGAACATGTGGAATTAGGATTTTGGATCCTTCATGGATCAGAGAAGAGAGGCGGTTTTGCTCTGAAACAGTAAAACTCTGCATGTTTGTAACTCCACAGGAAAACACTGATGATTTATTATTTCTTCTTTGTATATAGATAGAGTATCTCACCCTTTTGGGGAAAAAAAAGTCTTTTTGATGTGTTGAAAATTGTTTTAATCTTAG
Seq C2 exon
GTGTCTTCTGTTTATGAAGCAAGATGTACAGGAGAGAGAGATTCTGGAGCAAAGTCAGATGGCTTCCGCGGAAAGATGTGCTCCAGCGCCAGCTCCACCTCGGAAGAGACAGGCTCAGAAGGCGGAGGCGAGTGGGTGGGCCCTAGTGAAGAGGAGCTCTTTTCTCGAACTCATCTCTAAACCTGCAAAATAGTACAAATTATTGTTTAAAAATGATATGTGATGGAAAATTACTCTTCAGTGAGACCTGTTAATCTAAAACAACAACTTAGGTTTCCTCTTCAATTAACTGATTCAGATTGGTAATAATTATCTTTCTCTTCTTGCTTATTTTAGAGTTGAGGACAGCTATCCTGTTAAAGATTTTTTTTCCCAGCTGTTAAATTCTTGGCTATTTGAAATAGACTAGATTGTGTTGTCAAATCAAGAATGGGTGTGCATGTGCTTGTCTTAGAAGTATCACTGCTTTTTGCATCTTAACTGCAGTTAATTTTCCTTCCGACTGCGGTTATATCACTATGACCTTACTAGCATTGCAGTGTCAACAACCACTTCTGCTCTTCAGAGACTTCAGCTTTGGAGCATTTAGGCTTTGTTCTCCAAGAACTGGGATATCCATTCTTACCCTACAGTGGCTTGATGCCTTTCTGAAGGCGAGAGGGAAGCCTGGGTGACTCAGCGGTGGTCTCCATTCAGCAAAATCTCATGTACATTTCCAGTAGGAACCGCAGAGGTGTGCTTTTCAAGACTCACCAAATACTGTGTTTTCTCTCTTAGGATTTCTTTTCCCCTAAAGTATCACGGAAGATACTATGGTTCGTGACTTTCTTGCTAACTGAAGAAGCCAAGGATTTGGGGTGTGGGGTCGTATGCGAGACACAGTGGGGTAAGGGTGCATACCCCACCCCTTACCTGCTCTCATACTGCAGTTACATTTACACCAAAACCCCATGCAGGGTTCTTTGTGGTGAGTGTTCCATACGTGCTAAGGACCTTAGTTACAGATTGTTACTTTCTGGTGACCTATGTTGAATTGAAACCCCCAAAACTTGAAATTGTGAACATTTGACATGCAGTAAAGGCCACCTCATCACCCAGAGAAATCTTTGGCTGCTGCAGCTAGCCGCTTCTTGGCTGTGATGTAGTATAGCTTCGATCTCATTTTGTGTTTGAGAGAATGTTCTGGGCAAGTTCTGTGTGTGGTGGGTTGGGGCGGGTAGAGTCATGAGTTTTCCACATCCCTGTGTGGTGGTTTTGCTGACTGTCGCTCCGTGGGACTGGCTCCCGTTTCTCCTTGGTGAGCCCGGGGAGCCGGCGCATCTTGTGAGTCGCGTCTGTGCATGGCGATCCGCTCCTCCGGCTCTCATGGCATTGTGCCACAGGCAGAGGCCAGGAGGAGCAGTATGTGCACAGCCGAAACATTTTACATTTTTTACATTGTTTTTCTTTTTTAACCAACTCATTGTTTAAAAAACAAAAACAAAAAAAACCTAATCTGTGAAATCAGCGTAGCATGCCTGGAGCATCAGGAATGGCAGAAAAGTCTGATGCGCTCTAGACAGCTTCACCACTCATTTGGGCAGGCAGTAAACACACATATAATTTATTAGCTGGGAGCTGAACTGGCTGTGAAATCTATGATTTGCTTTGAACATTTGGGTTTTGTTGCCTTTTTCTTAATTGATAACACAGAAAAGAAAGTACCATCAAAGACTGTGGAGTCATTGAGGGTCTGTGTGTCCTCACCGAGAGGGACCTGGTGTGCCCGCCGGGTCGATCTTCCCACGTGTTAGGGTTTATTTTTATACAACACATTTTTTGACACTTTAAGGTGGGTGGGTGTGTGTGTGTGTGTGTGTGTGCGCGCGTGCGCGCGCGCATGTGTAAGGTTTTATGTTGCTGTTATTTATTTACGAACTTCAGATACGTTTTTATGTATTTTTCATTCTTCTGGAGCTTCCTAAAAATTGATAAGCATCTGCACTGAAATATAATTTAACAGCAAAAGTAAAAAAGGATTGAAAGTTGTAAATTCCTCATATCACTACAGTGACGATTATTCTAGAAATCGTTGCTTGTGTAGCAAAGACCAAATAAATAGATTTCAGACACAACCTTGAGCACAGTTGATTTTGGACAGCTGCTGTTTATTAGGAAAGGGCTCCAGGTGGCAAAGGTGCACACTTCCTCAGACACAGGTGAGAAGATGCAGCACCTTCCACAGGTGAATGGGACGGATTCGAAGTGAGCAAAGGGATTCACAAATTATGTATTTATTTGTTTTCATAGTTAAGTAGCTGAAGCTCAGAGGCTTTCAGCAACAGAGATGAAAGTGTGGCTTTTTAGTTTTGTGAATGGATGATCACAAAGAAAAAGCATTTTTAAAAAGTTGGCAAACGCTGAAACGCACTGTGGTATGAAGCGCATTGCATTTCCATAGCACTGAAGTACCAGTTTCCATTCCTGGGCTGAGATTGTTTTTCCCGTGGTTGTATTGTTCTGATTTCACGTACACCAGAGTAACTGATTTTTTTTTGTTTGTTTTCTTGTGGAGTTAACACCAAATAAAAATTGTAAAAAACAGTTTGTTGTTTTTATTTCTCATAGCAAAGCTTCTTTTGTAAAGAACTCCAGCTTCCTTTTACTCATGAGCATCCGTGGAAGAGCAAGTGCCCAGGTTACATTTGTTCTAGATGGAGGTCATTTAGCTCTCATTGCAGACACTGCTGAAAACATTGTGCAGCTTTGCTAGGGAAGAAAGTGGTGTGGCCTGCTGAGAAATCAGCGGCTCCTCCCCATCTCACCCCCAGCACACGCAGGGACTACTACCTGAGTCTGCAAAACACATAGCATTTTTGTCCGTGGATGGTACACAAAGCTCAATCTTTTTGTTTTCTTCTGGGGAAAAAATTAAATCTTTATATGTTAATATGATTGATATTCATTGTGCAAAAAAAATCAGTGTGTTTTTAAAGAAGTATAAGGGAAAAGGAAAACTCATATGTCCTTCTGTCACTCTGAGACATACACTGGTAACATCTGTGCAAGCCCCTTTCCAGGATTCTGAATGTACAGTATATATGAATGCATACACAGAGAAATTTACATTCAAGAGTGTACTATACTTGTTCTTCTATAACATCAGAAATAGGTTTTTACTCAGATGTCTTCATGTCGGTAATTATAGAACTACATAATTATTTTTATAGCTGTATTATGTAGATTTAACAGGTTCCTCATTGATAAAACAATGTTTTTTTGGTTGTTTATTCAGTATCTGAATAACGTTTCTATGGACATCTGTAAACATGTATGAGGGGACTTTTAAAAGTTCATGGAAAATGGAATTAAAAGAAAAATAAAAAAATATAAACTTTATTTCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170871-KIAA0232:NM_001100590:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=NA C2=0.691
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)