RnoINT0083292 @ rn6
Intron Retention
Gene
ENSRNOG00000027623 | LOC680039
Description
hypothetical protein LOC680039 [Source:RGD Symbol;Acc:1596848]
Coordinates
chr14:79321764-79325896:+
Coord C1 exon
chr14:79321764-79321861
Coord A exon
chr14:79321862-79323577
Coord C2 exon
chr14:79323578-79325896
Length
1716 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
AATTGTTTCTTGAATTGTAGGTG
3' ss Score
7.98
Exon sequences
Seq C1 exon
AATGTTATACAAATGCCAAGGGAGAGAATGGTATAGAAGAATATCCAGATGCTAAAGAGACACCCAGTCGTGAAGAGCGTCTGTTAGATTTTAATAGG
Seq A exon
GTAAGTCGACTGTCCTCCTCCCTACCATTCTAGTCACAAACTTGAGGGTCCTGTGACACACCCCTGGCCTATGTTCCCCAGATCCTGGGGGTTGCCTTTCTCCTCTTGGCCCTTTCTTTGGGGCCTTAGCCCTACCCACAACTCCCAACCAGTTGCCAGACTTTCATGAACAGCCCCTAATGTCCCCCCACTGGCACTACACTGCTGGCACAGGGGTTTTAAATGCTGTGCCAAGCCTGTTGTTTCTTGTTCATTCCTGGGGCAACATCTTCCTTCCAGTGTACTTTTCCAACCTGTGTGAGCCCTTTCTGTGCTCTTGTGTACTCTCTGGGTGGGGTCCCACCATCCCAGACACTTCTGTCTCCCTAACAGGCCTGTGAGCACCATGAAGGCACATTCAAGTCCTTGACCTACTTTTAGCTCAGTTTCAAGCTTTCCACCGTTAGGCAAGTTAAGATCAGTGAATTGAAGGAAACCTATTTTCTTCTCAGAGTTATCTGTAAGAATTTTCCAAAGCACCATATAGTGCTAATCCCACTGACTTATCACTTTGTGTTAATATGTCTAAGACCACATGCAAGGCCACCCCATAGCCTTCCACCCTGAGTGAGTGTCTCTTCACCTGTCTCTTCCTCTCACCTCTACCCACAGTGTGTCTGCCAGCCTGTTAATTAATGTATCTCACCTCCACCTTCCATCCACTTCTTTACTCCACACCATCCTTTCCACATGGCTCAGACCACTGCTACTCAGCAGTAGCCACAGTCTTTCTCGTCTTGTCCTTGCTTCTGCTTGTCCCTAACAGACATTCTGCAAGATAGTGACCGAAAAACACCCCTGTGCACTAAGTATTCTTGGCATACTCATGCATTTGCAGAATACAAAATGGAAGTGTCTGGAAATGGAGCATAGGGCTGCACACCCCATTGTCTGGCTGTAGGACACATGCTACTATGCTGTGCACTTGGAAGAAATTCAGACTCCCTCCATGCCTGGAAGCCTGTGGGCTTTGCTCTCACATAGGTCTTCTGTGTTCCCGCCTTGAACTCAAAAACAGGGCCTGTGGTGGAGTGATGCTCGCGGTGGATATTGTGATGCACTGGGAAATATTGCCAGTTACTGTGGCTGGCAGAAGGGTTACCATTGCCATCTAGTATCATTGAGGACCCAGATGCCAGCCTTCCCTTAAACACAAGAAGATGCTCTCTGCTGCACCTGGTGATGCTGACAGTGCTATGCACAGCACCAGCCTTTGCTCAGGAGTGCCACCTTCTGGAGCGCTCTGCCCCTGTTCAGAGTGTCCCATAGCCAGTGTCCTCATGTCTACAGTCTGAAGCTTTGTCCTTTGGTTTGTTTGTCTGCTGGAACCGTGCGCCCCTGTACATGACCATGTCTGTTTACCCAGGAGAGCCTGTGTGAAGTTCCACGGGCTACCCTGAGCCAGGTACTCAAAAGACTTGTTGAGAGTTAAGGAGTCCCCTTGTCTTACCCTAGTGTAGCCACATAGATTCCTGTGACTCTAGATGTGCAGAATTAGGATTAGACCCTTCAAGGCAAAGGAGAAGGTGTTCCCTGAGACCGTGCGTCTTCGCGTCTTTGTAGCTTTCTATAGGATATGTCAGTGGTTGCTTCTTCTTCTCTGTCTGGGAGTAGACTGAGCCTTTGGGGGGAGTTGTCTGATTTTTGGTGTATTGAAAATTGTTTCTTGAATTGTAG
Seq C2 exon
GTGTCTTCTGTTTATGAAGCAAGATGCACAGGAGAGAGGGGCTCTGAGACAAAACCAAATGGCCTCCCCGGGAAGATGTGTTCCAGTGCCAGCTCTGACGCGGGCGACACGGGCTCCGAAGCCGGCGGAGAGTGGGTGGGCCCCAGCAGAGAGGACCTCTTCTCCAGAACACACCTGTGACCCTGCAGAGTAGTAGCAGTCATTGCACATGCTCTGACGGGAGATTGCCCGCTGTGAGGCCTGTTAGTCTAAAGCAGTAACTTAGGCTTCCTCTTCCATTAACTGATCCGCACCAGTGATTCCCTTTCTCTTCTTGCTTACTTTAGCGTTGAGGACAGCTGTCCTGTTGAAGATTTGTTTCCAAGCTGTTAAGTTCTTGCTCTCTGAAGTAGACTAGACTGTGCTGTCCAGTGAGGAATGGGTGTGCATGTGCTTGTCCTAGTGCGTCCCGCTTCTGCATCGCAGCTGCAGGCCTCCCTCTGGCGGCTGTGTCGCCATCACCTTGTCAGCACTGTGGCGACAACCGCCACCGTCCAGAGACTCTAGCTCTGTTCTCTGAGCCAGGAGATCAGTCCTCCCCTGCAGTGGGTCAGGGCCTTGCTGAAGGAGGAGGGAAGCATGGTGACTCATCTGCAGGCTCATTCAGAAGATCTCATGGACCTTGCTGTAGGAACACAAGGGTGTGCTTTAGAGACTTACAGAATACTGTGCTTTCTCTTAGGATTCCCCTAAAGTACTATGGAAGTTACTGTGGCTTATGACTTTCTTGCTAGCTGAAGAAGCCAAGGATTCGAGGCACGGGGTAGTGGATAGATGAGTTCTGCTACTGCAGTGTGTCTACAGCAGGCACAATGTGGTTCTCTGAACTGTCCCTCCAGTGCATAGTTGAGGACCTTACTTGCAAATTATTATCTGAACTTAAGTCTCCAAGTGAACTTAAAAACATTTGACATGTGCAGTAAGGACACCTCTTACCCCAAAGAAATCTTCGGCTGCTGCAGCTAGCTGCTCCTGTGGCTGTGATGTAGTATAGCTTGTATCTCATTTTGTGTTTGAGAGAATGTTCTGGGCAAGTTGTGCTTGCGGTGGGCTGGGGTGGGCAAAGGAATTTCCCACAGACCTGTGTGATTGCTGTTCTGATCATCGCCTCATGTGACTTGGTGAAGCAGGCAGGCAGCAGGCCTCACAGTCACATTAAGTGTGCTGATCACCTTGAATCTCTCTTGCAGCACTGCCACAGGTGCTAGTAGGGCCAATTGTGCAAAACCTAAACATCCAAAATTATTTTTCTCTTTTAACCAGCTTGTTGTTTTTAAAAACACCTTGTCTATGACATGGATTCAGCATGTCCAGAACATCAGGAGTGGCTGAGAGGTCTGAAGTAGTTGAACTGGCCTCTCCAGTAAGTGGAGCAGCACTGGACATGTGTGTGGCTTCTTAGCTGGGAGTGGAGCTGCCCCTCAGGCCTTGCTGGTGGTACTTGAGTTTGTTGCCTGTTTCTCAGGAACACAGGAAACACCATGGAGACTGTGCAGGCCCTGTAGTCCTGTGCGTCCTCATCATGGGAGCCTGGCTTGCTGGCTGGGGCATCTTACCACCTTAGGGTTTGTTTTCATACAGCACATCTTCTGACACTCTACAGTGGCTTGTGTGTGCGTGTGTGCATGTGGAAGGTTTCATGTTGCTCTTATTTATTTACAGGTATCAGATAAGTTTTATGTATTTTTTCTTCTGGAGCTTCCTAAAATTTGATTAACATCTGCACTGAAATATAACCTATCATCAAAGGCAAAAAGAATTGAAATTGTAAATTCCTAAAATCAATGCCATCACGATTACCCTAGAAATTGTTGCTATGACCAAATGGATTTCATACTCAGCCATGAGCTTGGGTGACCTGGACAGCCATTGTTCATCAGGAAAGGCTCCAGGTGGCAAAGACACCTACGTCTTCGGCTGTGGGGAGAGGCCCTCCACAGGGGACACGGTGGGTCATCAAAGGCAAAGGGATAACTAGATTCTGTATTTGGTTTCTTTTTGTAGTTAAGTGGCTAAAGCTCAGAGGCTTTGGTACAGAATTAAAGTGTGGTTTTAGTTTTGTGAATGGATGATCACAAAAAGCATTAAAAAAAAGTTGGCAAACGCTGAAACGCACTGTGGTATGAAGCGCGTTGCATATCCGTAGCACTGAACTATCAGCTCCATTCCTGGGCTGATTTTTTTTTTCCCCCGTGGTTGTATTGTTCTGATTTCACGTACACCAGAGTAACTGATTTTTTTTTGTTTCGTTTTGTTTTGTTTTCTTGTGGAGTTAACACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027623:ENSRNOT00000029191:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.465 A=NA C2=0.814
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCGTGAAGAGCGTCTGTT
R:
AGAAAGGGAATCACTGGTGCG
Band lengths:
343-2059
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]