GgaINT0068426 @ galGal4
Intron Retention
Gene
ENSGALG00000015538 | KIAA0232
Description
KIAA0232 [Source:HGNC Symbol;Acc:HGNC:28992]
Coordinates
chr4:79433142-79434358:+
Coord C1 exon
chr4:79433142-79433239
Coord A exon
chr4:79433240-79434178
Coord C2 exon
chr4:79434179-79434358
Length
939 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
CTGTCAGTTTAAATCCGTAGGTT
3' ss Score
6.88
Exon sequences
Seq C1 exon
AGTGTTATACAAATGCCAAGGGAGAGAATGGTGTGGGAGAATTTGCAGATGTAAAGGAAATACCCAATGATGATGAACATCTTTTAGATTTTAACATG
Seq A exon
GTAAGTTTGCCACTGGATTGGGGGACGAGCTCCTTATTTTTCTAAGGGTGTGCCACTGTGTCTGTCTGTTCTTCAGAGTTTTCAGTCTGACCTCAAATGAAGTCCCTACAAAAATGTTTGAAAGCTTTTCTTCCCTTTTTATGGTTTGTTTAATCTCTTCTGTATCTCAGGCGTTCTTCTGAAAACTCCGCAGAGTGCAGAACATTGGATTTTGAGCAGCCATTAAATTTGGTTTCCTTTGGGAATACTTGGCTTTCTGTTGTGTGCACTAAACATACACGCCTTTTTTCCTCAGCTTCTGATTTCACTAACCATGGGGTGGGCTCATGTACACTGTGAAGCCAGAAAGCACTAACAATGAAAGGAGTGAATAGGACATATGCTCAGTTCTGTCCCATTACAAATAAAAAGCTGATGGACTTCACGGTAATGTTTGCTGTAGGGAAAATCTTCATGTTTCCGTGCGCTTATTGATGTCCTTTTGGAAGCGCTTAAATTTAACAGTGACATGCTTGGTGTAACTTTACTGATTCAGCTGAAAATATGTGGACTTTCCTCAAAATTCATCAGATTTGTGCTGTTTCCATGATATTTAACATTTACTCTCAGCATTTGGAGACAGCTTTTACAGCAATATTCTCTTAACCAACCAACACAGTGATAATGACACATTCTGAGTTTACTTTTCATTCTGCTGCTATTCTATGCAAGTCCTAAAGGGCCCTAAAATTAATTAAAGCCCTAAAATAAAAGACTACGTTTTTTCCTGCTGTTCTGTAGTCGTCAGTACATCGTGGACTAAGATAGAAAAGAGGAGAATTTATCCTGAATTGTGACATTTCTCTTGAATGCGTACAATATGACATTATTTACCAGCCCAGAAAAAAAGCAAACATGTTTTTATTGTTCCCCATCAACACTGTCAGTTTAAATCCGTAG
Seq C2 exon
GTTTCTTCTGTTTATGAAGCAAGGTGTGCAGATGATATAAATGCTGAGGCAAAACCAAACGGCTTCAGGAAGAAGATCTACTCCAGTGACAGCTCCAGCTCTGAAGACACAGCTTCAGAAGGTGGCAGTGAATGGGCTGATCCGTGTGAGGAGGAGCTTTTTTCTCGAACTCAACTATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015538:ENSGALT00000025047:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.212 A=NA C2=0.390
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACAAATGCCAAGGGAGAGAATGG
R:
AAAAAGCTCCTCCTCACACGG
Band lengths:
254-1193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]