GgaINT0068426 @ galGal3
Intron Retention
Gene
ENSGALG00000015538 | KIAA0232
Description
NA
Coordinates
chr4:82825136-82826784:+
Coord C1 exon
chr4:82825136-82825233
Coord A exon
chr4:82825234-82826172
Coord C2 exon
chr4:82826173-82826784
Length
939 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
CTGTCAGTTTAAATCCGTAGGTT
3' ss Score
6.88
Exon sequences
Seq C1 exon
AGTGTTATACAAATGCCAAGGGAGAGAATGGTGTGGGAGAATTTGCAGATGTAAAGGAAATACCCAATGATGATGAACATCTTTTAGATTTTAACATG
Seq A exon
GTAAGTTTGCCACTGGATTGGGGGACGAGCTCCTTATTTTTCTAAGGGTGTGCCACTGTGTCTGTCTGTTCTTCAGAGTTTTCAGTCTGACCTCAAATGAAGTCCCTACAAAAATGTTTGAAAGCTTTTCTTCCCTTTTTATGGTTTGTTTAATCTCTTCTGTATCTCAGGCGTTCTTCTGAAAACTCCGCAGAGTGCAGAACATTGGATTTTGAGCAGCCATTAAATTTGGTTTCCTTTGGGAATACTTGGCTTTCTGTTGTGTGCACTAAACATACACGCCTTTTTTCCTCAGCTTCTGATTTCACTAACCATGGGGTGGGCTCATGTACACTGTGAAGCCAGAAAGCACTAACAATGAAAGGAGTGAATAGGACATATGCTCAGTTCTGTCCCATTACAAATAAAAAGCTGATGGACTTCACGGTAATGTTTGCTGTAGGGAAAATCTTCATGTTTCCGTGCGCTTATTGATGTCCTTTTGGAAGCGCTTAAATTTAACAGTGACATGCTTGGTGTAACTTTACTGATTCAGCTGAAAATATGTGGACTTTCCTCAAAATTCATCAGATTTGTGCTGTTTCCATGATATTTAACATTTACTCTCAGCATTTGGAGACAGCTTTTACAGCAATATTCTCTTAACCAACCAACACAGTGATAATGACACATTCTGAGTTTACTTTTCATTCTGCTGCTATTCTATGCAAGTCCTAAAGGGCCCTAAAATTAATTAAAGCCCTAAAATAAAAGACTACGTTTTTTCCTGCTGTTCTGTAGTCGTCAGTACATCGTGGACTAAGATAGAAAAGAGGAGAATTTATCCTGAATTGTGACATTTCTCTTGAATGCGTACAATATGACATTATTTACCAGCCCAGAAAAAAAGCAAACATGTTTTTATTGTTCCCCATCAACACTGTCAGTTTAAATCCGTAG
Seq C2 exon
GTTTCTTCTGTTTATGAAGCAAGGTGTGCAGATGATATAAATGCTGAGGCAAAACCAAACGGCTTCAGGAAGAAGATCTACTCCAGTGACAGCTCCAGCTCTGAAGACACAGCTTCAGAAGGTGGCAGTGAATGGGCTGATCCGTGTGAGGAGGAGCTTTTTTCTCGAACTCAACTATAAAAACTGCAGAGTAGGACGGATGATTTAAAAGTAACGTGAGGTGGAAAACTATCCTTCTTGAGGGTCTGTAGCTCTAAAACAACAACTTGAGTTTCCTCTTCAGTTAATGGATTCAGATGTGTATTTATCTTTCTCTTCTTGCTTATTTTATAGATGAGGACACAGCTGTCCTGTTGAAGATTTTTTTCACCCCCAAACTGTTAAATTCTTGGCTATTTGAACTAGACTAGATTGTGTTGTTAAATCAAGAATGGATGTGCATGTGCTTGTCTTAGTAGTACCACTGCTTTTTTGCATCTTAATTGCAGTTATTTTCATTCGTAACTGTAGCCCTACCACTACTGCTATCTTCTGAGCATCGCAGTGTCTACAAGTACTTCTGCTATTCAGAGACTTTAGCTTTTGGCACATTAGGCTTTGTTCTTTAAGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015538:ENSGALT00000025047:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.212 A=NA C2=0.390
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCCAAGGGAGAGAATGGTG
R:
AGAGCTACAGACCCTCAAGAAGG
Band lengths:
342-1281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]