MmuEX0013591 @ mm10
Exon Skipping
Gene
ENSMUSG00000029190 | D5Ertd579e
Description
DNA segment, Chr 5, ERATO Doi 579, expressed [Source:MGI Symbol;Acc:MGI:1261849]
Coordinates
chr5:36600485-36608046:-
Coord C1 exon
chr5:36607938-36608046
Coord A exon
chr5:36604511-36604608
Coord C2 exon
chr5:36600485-36602803
Length
98 bp
Sequences
Splice sites
3' ss Seq
CTCCATTCAAAATGGTTAAGAAT
3' ss Score
-1.09
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
TTTCCTGTACTGAACACTGATGTGCAAGAAGTAACAAGAAATCAAGAAAAGCAGAGCTGGTGGGAAAAAGCTTTGTACTCTCCCCTTTTCCCCACGTCAGAGTGTGAAG
Seq A exon
AATGTTATACAAATGCCAAGGGAGAGAATGGTATAGAAGAATGTCCAGATGCTAAAGAGACACCCAGTCGTGAAGAGCGTCTGTTAGATTTTAATAGG
Seq C2 exon
GTGTCTTCTGTTTATGAAGCAAGATGCACAGGAGAGAGAGGTTCTGAGACAAAACCAAATGGCCTCCACAGGAAGATGTGTTCCAGTGCCAGCTCTGACACGGGCGACACAGGCTCCGAAGCCGGCGGAGAGTGGGTGGGCCCCAGCAGAGAGGAGCTCTTCTCCCGAACACATCTCTGACCCTGCAGAGTAGTACCAGTCATTGAAAATGGCTGTGATGGGCAATTGCCTTGTGTGAGGCCTGTTAGTCTAAAGCAGCAACTTAGGTTTCTTCTTCAATTAACTGATCCACATCAGTGATTACCTTTCTCTTCTTGCTTATTTTAGCGTTGAGGACGGCTGTCCTGTTGAAGATTTGTTTCCAAGCTGTTAAGTTCTTGCTCTCTGAAGTAGACTAGACTGTGCTGTCCATGAGGAATGGGTGTGCATGTGCTTGTCCTAGTGCGTCCCGCTTCTGCATCGCAGCTGCAGGCCTCCCTCTGGCGGCTGTGTCGCCATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029190_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.196 A=0.394 C2=0.795
Domain overlap (PFAM):
C1:
PF153761=DUF4603=PD(17.8=94.6)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGAAAAGCAGAGCTGGTGG
R:
GTCAGAGCTGGCACTGGAAC
Band lengths:
167-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types