RnoEX0048899 @ rn6
Exon Skipping
Gene
ENSRNOG00000027623 | LOC680039
Description
hypothetical protein LOC680039 [Source:RGD Symbol;Acc:1596848]
Coordinates
chr14:79318373-79325896:+
Coord C1 exon
chr14:79318373-79318481
Coord A exon
chr14:79321764-79321861
Coord C2 exon
chr14:79323578-79325896
Length
98 bp
Sequences
Splice sites
3' ss Seq
CTCCATTCACAATGATTAAGAAT
3' ss Score
-0.53
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
TTTCCTGTACTGAACACTGATGTGCAAGAAGTAACAAGAAATCAAGAGAAGCAGAGCTGGTGGGAAAAGGCTTTGTACTCTCCCCTTTTTCCCACGTCAGAGTGTGAAG
Seq A exon
AATGTTATACAAATGCCAAGGGAGAGAATGGTATAGAAGAATATCCAGATGCTAAAGAGACACCCAGTCGTGAAGAGCGTCTGTTAGATTTTAATAGG
Seq C2 exon
GTGTCTTCTGTTTATGAAGCAAGATGCACAGGAGAGAGGGGCTCTGAGACAAAACCAAATGGCCTCCCCGGGAAGATGTGTTCCAGTGCCAGCTCTGACGCGGGCGACACGGGCTCCGAAGCCGGCGGAGAGTGGGTGGGCCCCAGCAGAGAGGACCTCTTCTCCAGAACACACCTGTGACCCTGCAGAGTAGTAGCAGTCATTGCACATGCTCTGACGGGAGATTGCCCGCTGTGAGGCCTGTTAGTCTAAAGCAGTAACTTAGGCTTCCTCTTCCATTAACTGATCCGCACCAGTGATTCCCTTTCTCTTCTTGCTTACTTTAGCGTTGAGGACAGCTGTCCTGTTGAAGATTTGTTTCCAAGCTGTTAAGTTCTTGCTCTCTGAAGTAGACTAGACTGTGCTGTCCAGTGAGGAATGGGTGTGCATGTGCTTGTCCTAGTGCGTCCCGCTTCTGCATCGCAGCTGCAGGCCTCCCTCTGGCGGCTGTGTCGCCATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027623_MULTIEX1-8/8=7-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.180 A=0.465 C2=0.814
Domain overlap (PFAM):
C1:
PF153761=DUF4603=PD(2.6=91.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGAGAAGCAGAGCTGGTG
R:
GTCAGAGCTGGCACTGGAAC
Band lengths:
167-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]