MmuEX0013591 @ mm9
Exon Skipping
Gene
ENSMUSG00000029190 | D5Ertd579e
Description
DNA segment, Chr 5, ERATO Doi 579, expressed [Source:MGI Symbol;Acc:MGI:1261849]
Coordinates
chr5:36943153-36950695:-
Coord C1 exon
chr5:36950587-36950695
Coord A exon
chr5:36947160-36947257
Coord C2 exon
chr5:36943153-36945452
Length
98 bp
Sequences
Splice sites
3' ss Seq
CTCCATTCAAAATGGTTAAGAAT
3' ss Score
-1.09
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
TTTCCTGTACTGAACACTGATGTGCAAGAAGTAACAAGAAATCAAGAAAAGCAGAGCTGGTGGGAAAAAGCTTTGTACTCTCCCCTTTTCCCCACGTCAGAGTGTGAAG
Seq A exon
AATGTTATACAAATGCCAAGGGAGAGAATGGTATAGAAGAATGTCCAGATGCTAAAGAGACACCCAGTCGTGAAGAGCGTCTGTTAGATTTTAATAGG
Seq C2 exon
GTGTCTTCTGTTTATGAAGCAAGATGCACAGGAGAGAGAGGTTCTGAGACAAAACCAAATGGCCTCCACAGGAAGATGTGTTCCAGTGCCAGCTCTGACACGGGCGACACAGGCTCCGAAGCCGGCGGAGAGTGGGTGGGCCCCAGCAGAGAGGAGCTCTTCTCCCGAACACATCTCTGACCCTGCAGAGTAGTACCAGTCATTGAAAATGGCTGTGATGGGCAATTGCCTTGTGTGAGGCCTGTTAGTCTAAAGCAGCAACTTAGGTTTCTTCTTCAATTAACTGATCCACATCAGTGATTACCTTTCTCTTCTTGCTTATTTTAGCGTTGAGGACGGCTGTCCTGTTGAAGATTTGTTTCCAAGCTGTTAAGTTCTTGCTCTCTGAAGTAGACTAGACTGTGCTGTCCATGAGGAATGGGTGTGCATGTGCTTGTCCTAGTGCGTCCCGCTTCTGCATCGCAGCTGCAGGCCTCCCTCTGGCGGCTGTGTCGCCATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029190_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.270 A=0.394 C2=0.802
Domain overlap (PFAM):
C1:
PF153761=DUF4603=PD(2.7=91.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGAAAAGCAGAGCTGGTGG
R:
GTCAGAGCTGGCACTGGAAC
Band lengths:
167-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: