GgaEX1036024 @ galGal4
Exon Skipping
Gene
ENSGALG00000006702 | MFGE8
Description
lactadherin isoform 2 precursor [Source:RefSeq peptide;Acc:NP_001264040]
Coordinates
chr10:12528986-12530747:+
Coord C1 exon
chr10:12528986-12529141
Coord A exon
chr10:12529742-12529886
Coord C2 exon
chr10:12530563-12530747
Length
145 bp
Sequences
Splice sites
3' ss Seq
AGCCCTGCGTGCTGTGTCAGGTT
3' ss Score
5.59
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
Exon sequences
Seq C1 exon
GCCAACCTGCTGAGGAAGATGAGGCTGAGTGGTGTTATCACACAAGGTGCTCGCCGCGTGGGCAAGGCCGAGTACGTGCGTGCCTATAAGGTGGCCTACAGCCTAGATGGGCGTGAGTTCACCTTCTACAAGGACGAGAAGCTTAACACAGACAAG
Seq A exon
GTTTTCCAGGGCAACGTGGACTACGGCACCATGCAGACCAACATGTTTGACCCTCCCATCACAGCGCAGTACATCCGCATCTACCCCGTGGTGTGCCGCCGTGCCTGCACGCTGCGCCTCGAGCTCATCGGCTGCGAGATGAATG
Seq C2 exon
GTTGCTCGGAGCCTCTGGGCATGAAATCCCGCCTGATCTCTGACCAGCAGATCACAGCTTCCAGCGTCTTCAAGACATGGGGCATTGATGCCTTTACCTGGTATCCCCATTATGCCCGCCTGGACAAGATGGGCAAGACGAATGCATGGACAGCACTGCACAATGACCAGTCCGAGTGGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006702-'12-16,'12-11,13-16
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=FE(36.7=100)
A:
PF0075420=F5_F8_type_C=PD(29.5=83.7)
C2:
PF0075420=F5_F8_type_C=PU(32.1=72.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGCCTATAAGGTGGCCTAC
R:
CCACTCGGACTGGTCATTGTG
Band lengths:
257-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]