GgaEX1045919 @ galGal4
Exon Skipping
Gene
ENSGALG00000011963 | PRDM5
Description
PR domain containing 5 [Source:HGNC Symbol;Acc:HGNC:9349]
Coordinates
chr4:53677232-53681528:+
Coord C1 exon
chr4:53677232-53677324
Coord A exon
chr4:53677586-53677707
Coord C2 exon
chr4:53681449-53681528
Length
122 bp
Sequences
Splice sites
3' ss Seq
TTGCTGATTATCCCATATAGTTA
3' ss Score
4.01
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
TGTACTTCAGTGCACAGAGAATATCAACCCAGGAGACTCTTCAAGAAGTTTTCAGTGTTCTGTTTGCAATACTTCCTTCAGCTCAGAATCGAG
Seq A exon
TTATGAACAGCACAAGGAGGCATGCAGAGGGGATGCCAGATTCATATGCAAGGCAGATAGCTGCGGGAAGAGGTTCAAGAGTAAGGATGCCCTGAAAAAACATAAGGAAAATGTTCATAGTG
Seq C2 exon
GAAATTCTAGGAAAAAGCTGACGTGTTCAGTGTGCAATAAGAAATGTTCCTCAACAACAAATCTCCAGGAGCATCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011963_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.167 C2=0.009
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=PD(17.4=12.5),PF128742=zf-met=PU(66.7=43.8)
A:
PF128742=zf-met=PD(28.6=14.3),PF0009621=zf-C2H2=WD(100=61.9)
C2:
PF128742=zf-met=WD(100=77.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACTTCAGTGCACAGAGAAT
R:
TCGATGCTCCTGGAGATTTGT
Band lengths:
170-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]