GgaEX1047840 @ galGal3
Exon Skipping
Gene
ENSGALG00000004578 | RABGAP1L
Description
NA
Coordinates
chr8:7510018-7576505:-
Coord C1 exon
chr8:7576355-7576505
Coord A exon
chr8:7518930-7519043
Coord C2 exon
chr8:7510018-7510092
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTCTCCTTTTCACAGGAT
3' ss Score
12.12
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GCACAATAACCTTGTGGTGAGACCCAACGGATTGTCCACACTGGTGAAGAGAGGAGTTCCTGAGGCACTGAGGGCAGAGGTTTGGCAGCTGCTGGCAGGATGCCACGACAACGAGGCAATGCTGGATAAATACAGAATTCTCATCACAATG
Seq A exon
GATTCTGCTCAGGAGAATGTCATTACGCGAGATATTCATCGCACGTTTCCAGCACACGATTATTTCAAAGATACAGAAGGAGACGGTCAGGAATCTCTATACAAGATCTGCAAG
Seq C2 exon
GCATACTCTGTCTACGATGAAGACATTGGCTATTGCCAGGGACAGTCCTTCCTTGCAGCTGTGCTACTGCTTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004578-'17-25,'17-24,20-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PU(14.2=56.9)
A:
PF0056613=RabGAP-TBC=FE(18.1=100)
C2:
PF0056613=RabGAP-TBC=FE(11.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTGTGGTGAGACCCAACG
R:
ATGAAGCAGTAGCACAGCTGC
Band lengths:
218-332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]