HsaEX6035016 @ hg19
Exon Skipping
Gene
ENSG00000152061 | RABGAP1L
Description
RAB GTPase activating protein 1-like [Source:HGNC Symbol;Acc:24663]
Coordinates
chr1:174363133-174652734:+
Coord C1 exon
chr1:174363133-174363283
Coord A exon
chr1:174606513-174606626
Coord C2 exon
chr1:174652660-174652734
Length
114 bp
Sequences
Splice sites
3' ss Seq
CTATTTTCTTTCTTTTTTAGGAC
3' ss Score
13.84
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GCACAGTAACCTTGGTGCACGACCGAAAGGGCTGTCTACTCTGGTGAAGAGTGGTGTCCCTGAAGCATTGAGGGCAGAGGTATGGCAGTTATTGGCAGGCTGCCATGACAACCAGGCAATGCTGGATAGATACCGAATTCTTATCACAAAG
Seq A exon
GACTCAGCCCAGGAGAGTGTTATTACTCGAGATATTCATCGTACATTTCCCGCACATGATTACTTTAAAGATACTGGAGGAGATGGTCAAGAATCGCTCTATAAGATCTGCAAG
Seq C2 exon
GCCTACTCTGTGTATGATGAAGACATTGGGTACTGTCAAGGGCAGTCTTTTCTTGCTGCTGTATTACTGCTGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000152061-'22-27,'22-25,27-27=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PU(14.2=56.9)
A:
PF0056613=RabGAP-TBC=FE(18.1=100)
C2:
PF0056613=RabGAP-TBC=FE(11.8=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAGTAACCTTGGTGCACG
R:
ATGCAGCAGTAATACAGCAGC
Band lengths:
226-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)