DreEX6098568 @ danRer10
Exon Skipping
Gene
ENSDARG00000061757 | rabgap1l
Description
RAB GTPase activating protein 1-like [Source:ZFIN;Acc:ZDB-GENE-050208-389]
Coordinates
chr22:17318536-17376968:+
Coord C1 exon
chr22:17318536-17318686
Coord A exon
chr22:17374146-17374259
Coord C2 exon
chr22:17376894-17376968
Length
114 bp
Sequences
Splice sites
3' ss Seq
TCTTGTATTTCGGCCCACAGGAA
3' ss Score
9.3
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCAGGGAAACCTGTTGACGCGACCCAAGGGTCTGTCTGCTCTGGTGAAGCCTGGGATCCCGGAGGCCTTACGAGCTGAAGTCTGGCAGCTCCTGTCTGGCTGCCACAACGATCAGGCCCTGCTAGAGCAATACCGCATCCTCATCACCAAG
Seq A exon
GAATCTGCCCAGGAAGCCGTGATCACCAGAGACATCCATCGCACCTTCCCTGCTCACGATTACTTCAAAGACTCAGGCGGCGATGGCCAAGACTCTCTATACAAGATCTGCAAG
Seq C2 exon
GCTTACTCTGTGTATGATGAGGAAATTGGTTATTGCCAAGGGCAATCATTTTTGGCGGCTGTATTACTGTTACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061757-'14-21,'14-20,15-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PU(14.2=56.9)
A:
PF0056613=RabGAP-TBC=PU(21.3=97.4)
C2:
PF0056613=RabGAP-TBC=FE(11.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACCTGTTGACGCGACCC
R:
TGTAACAGTAATACAGCCGCCA
Band lengths:
220-334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]