MmuEX7000893 @ mm10
Exon Skipping
Gene
ENSMUSG00000035437 | Rabgap1
Description
RAB GTPase activating protein 1 [Source:MGI Symbol;Acc:MGI:2385139]
Coordinates
chr2:37508928-37537376:+
Coord C1 exon
chr2:37508928-37509078
Coord A exon
chr2:37532516-37532629
Coord C2 exon
chr2:37537302-37537376
Length
114 bp
Sequences
Splice sites
3' ss Seq
CTCTTCCTCTATTTCTACAGGAG
3' ss Score
10.26
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
GCATCTCAACTTGAGTGTGAGACCGAAGCAGTTGTCATCCTTAGTGAGAAGTGGTGTTCCTGAAGCTCTTCGTGGAGAAGTCTGGCAGCTGCTAGCAGGCTGCCACAACAACGATCACTTAGTAGAAAAGTACCGAATTCTCATCACAAAG
Seq A exon
GAGTCTCCTCAAGACAGTGCTATCACCAGAGATATTAACCGCACATTTCCAGCTCATGACTACTTCAAGGACACAGGAGGAGATGGACAAGATTCTTTATATAAAATATGCAAG
Seq C2 exon
GCATATTCTGTGTATGATGAAGAGATTGGTTACTGCCAGGGCCAGTCCTTCCTCGCAGCTGTACTGCTTCTCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035437-'24-44,'24-36,35-44=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.053 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PU(14.2=56.9)
A:
PF0056613=RabGAP-TBC=FE(18.1=100)
C2:
PF0056613=RabGAP-TBC=FE(11.8=100)
Main Skipping Isoform:
ENSMUST00000061179fB15545
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCTCAACTTGAGTGTGAGAC
R:
GTGGAGAAGCAGTACAGCTG
Band lengths:
226-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types