DreEX0007251 @ danRer10
Exon Skipping
Gene
ENSDARG00000098967 | RABGAP1
Description
RAB GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:17155]
Coordinates
chr10:8740315-8782564:-
Coord C1 exon
chr10:8782414-8782564
Coord A exon
chr10:8744367-8744480
Coord C2 exon
chr10:8740315-8740389
Length
114 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTTCTCTTTTATTAGGAA
3' ss Score
10.6
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCATCTGAACTTGGCAGTGCGTCCCAAACAGCTCCCGGCGCTGGTGCGCAGCGGTGTTCCAGAAGCCTTGAGAGGGGAGGTGTGGCAGCTACTGGCCGGATGTCATAACAATGACCATCTGGTGGAGGAGTACCGGACTCTCATCACTAAG
Seq A exon
GAATCTCCACAGGACAGTGCCATCACTCGGGACATTAACCGTACGTTTCCTGCACACGACTACTTCAAAGACACAGGGGGTGATGGGCAGGACTCTCTCTATAAGATCTGTAAG
Seq C2 exon
GCGTATTCTGTTTATGATGAAGAAATCGGTTACTGTCAAGGGCAGTCCTTTCTTGCTGCTGTGCTGCTATTACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098967-'13-16,'13-15,14-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=0.053 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PU(14.2=56.9)
A:
PF0056613=RabGAP-TBC=FE(18.1=100)
C2:
PF0056613=RabGAP-TBC=FE(11.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCTGAACTTGGCAGTGCG
R:
GTGTAATAGCAGCACAGCAGC
Band lengths:
226-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]