RnoEX0073395 @ rn6
Exon Skipping
Gene
ENSRNOG00000009402 | Rabgap1
Description
RAB GTPase activating protein 1 [Source:RGD Symbol;Acc:1304691]
Coordinates
chr3:21756594-21786585:+
Coord C1 exon
chr3:21756594-21756744
Coord A exon
chr3:21782079-21782192
Coord C2 exon
chr3:21786511-21786585
Length
114 bp
Sequences
Splice sites
3' ss Seq
CTCTTCCTCTCTTTCTACAGGAG
3' ss Score
12.33
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
GCATCTCAACTTGAATGTGAGACCAAAGCAGTTGTCATCCTTAGTGAGAAGTGGTGTTCCTGAAGCTCTCCGTGGAGAAGTCTGGCAGCTGCTAGCAGGCTGCCACAACAACGATCACTTAGTGGAAAAGTACCGGATTCTCATCACAAAG
Seq A exon
GAGTCTCCCCAAGACAGTGCTATCACCAGAGATATTAACCGCACATTTCCAGCTCATGACTACTTCAAGGACACAGGAGGAGATGGACAAGATTCCTTATATAAAATATGCAAG
Seq C2 exon
GCATATTCTGTGTATGATGAAGAGATTGGTTATTGCCAGGGCCAGTCCTTCCTCGCGGCTGTGCTGCTTCTCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009402-'30-41,'30-38,37-41
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.053 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PU(14.2=56.9)
A:
PF0056613=RabGAP-TBC=FE(18.1=100)
C2:
PF0056613=RabGAP-TBC=FE(11.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCTCAACTTGAATGTGAGACC
R:
GTGGAGAAGCAGCACAGCC
Band lengths:
226-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]