BtaEX0029441 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039172 | RABGAP1
Description
RAB GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:17155]
Coordinates
chr11:94174149-94229708:+
Coord C1 exon
chr11:94174149-94174299
Coord A exon
chr11:94225795-94225908
Coord C2 exon
chr11:94229634-94229708
Length
114 bp
Sequences
Splice sites
3' ss Seq
GCTTCCTGGTGTTTCCACAGGAG
3' ss Score
9.18
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
GCATCTCAACTTGAGCGTGAGGCCAAAGCAGTTGTCATCCTTAGTAAGAAGCGGTGTTCCTGAAGCTCTTCGAGGAGAAGTCTGGCAGCTCCTAGCAGGTTGTCACAACAATGACCACCTGGTAGAAAAATACCGAATTCTCATCACTAAG
Seq A exon
GAGTCTCCCCAGGACAGTGCTATCACTCGTGATATTAACCGGACATTCCCAGCCCATGACTACTTTAAGGACACAGGAGGAGATGGACAAGATTCTTTATATAAAATATGCAAG
Seq C2 exon
GCTTATTCTGTGTATGATGAAGAGATTGGCTATTGCCAAGGCCAGTCATTTCTCGCTGCTGTTCTGCTTCTCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039172_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.053 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PU(14.2=56.9)
A:
PF0056613=RabGAP-TBC=FE(18.1=100)
C2:
PF0056613=RabGAP-TBC=FE(11.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCTCAACTTGAGCGTGAG
R:
ATGGAGAAGCAGAACAGCAGC
Band lengths:
226-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development