GgaEX0027617 @ galGal4
Exon Skipping
Gene
ENSGALG00000001225 | RABGAP1
Description
RAB GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:17155]
Coordinates
chr17:8842570-8863610:+
Coord C1 exon
chr17:8842570-8842720
Coord A exon
chr17:8862519-8862632
Coord C2 exon
chr17:8863536-8863610
Length
114 bp
Sequences
Splice sites
3' ss Seq
GTTTTTACTTTTTCTAATAGGAG
3' ss Score
8.59
5' ss Seq
AAGGTATTC
5' ss Score
6.8
Exon sequences
Seq C1 exon
GCACCTCAATTTGAGTGTGAGGCCAAAGACACTGTCAGCGCTGGTGAGGAGTGGTGTCCCTGAGGCCCTGAGAGGAGAGGTCTGGCAGCTGCTGGCAGGGTGTCACAACAACGATCACCTGGTGGAGAAGTACCGAATCCTCATCACAAAG
Seq A exon
GAGTCTCCACAAGACAGTGCTATCACCCGAGACATCAATCGAACGTTTCCTGCTCATGATTATTTTAAAGATACTGGAGGAGATGGTCAGGACTCCTTGTATAAAATATGCAAG
Seq C2 exon
GCCTATTCTGTCTATGATGAAGAGATTGGTTACTGTCAAGGCCAATCGTTTCTTGCTGCTGTGCTGCTTCTACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001225_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.053 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PU(14.2=56.9)
A:
PF0056613=RabGAP-TBC=FE(18.1=100)
C2:
PF0056613=RabGAP-TBC=FE(11.8=100)
Main Skipping Isoform:
ENSGALT00000001858fB139
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCTCAATTTGAGTGTGAGG
R:
ATGTAGAAGCAGCACAGCAGC
Band lengths:
226-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]