GgaEX0027617 @ galGal3
Exon Skipping
Gene
ENSGALG00000001225 | RABGAP1
Description
NA
Coordinates
chr17:9553130-9579462:+
Coord C1 exon
chr17:9553130-9553280
Coord A exon
chr17:9573727-9573840
Coord C2 exon
chr17:9579421-9579462
Length
114 bp
Sequences
Splice sites
3' ss Seq
GTTTTTACTTTTTCTAATAGGAG
3' ss Score
8.59
5' ss Seq
AAGGTATTC
5' ss Score
6.8
Exon sequences
Seq C1 exon
GCACCTCAATTTGAGTGTGAGGCCAAAGACACTGTCAGCGCTGGTGAGGAGTGGTGTCCCTGAGGCCCTGAGAGGAGAGGTCTGGCAGCTGCTGGCAGGGTGTCACAACAACGATCACCTGGTGGAGAAGTACCGAATCCTCATCACAAAG
Seq A exon
GAGTCTCCACAAGACAGTGCTATCACCCGAGACATCAATCGAACGTTTCCTGCTCATGATTATTTTAAAGATACTGGAGGAGATGGTCAGGACTCCTTGTATAAAATATGCAAG
Seq C2 exon
GGAATAAGTGTTATCTTTAACGTTGCACTGGGATTATTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001225_MULTIEX2-1/5=C1-5
Average complexity
C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.053 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PU(14.2=56.9)
A:
PF0056613=RabGAP-TBC=FE(18.1=100)
C2:
PF0056613=RabGAP-TBC=FE(6.4=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCTCAATTTGAGTGTGAGG
R:
AATCCCAGTGCAACGTTAAAGA
Band lengths:
186-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]