RnoEX0073417 @ rn6
Exon Skipping
Gene
ENSRNOG00000002736 | Rabgap1l
Description
RAB GTPase activating protein 1-like [Source:RGD Symbol;Acc:1304620]
Coordinates
chr13:78206788-78382378:-
Coord C1 exon
chr13:78382228-78382378
Coord A exon
chr13:78227396-78227509
Coord C2 exon
chr13:78206788-78206862
Length
114 bp
Sequences
Splice sites
3' ss Seq
CTGTGTTTTTTTCCTTGTAGGAC
3' ss Score
12.31
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
GCATAATAACCTTAATGCCCGACCAAAAGGGCTACCCACCTTGGTAAAGAGCGGTGTTCCTGAGGCATTAAGGGCAGAAGTATGGCAGCTTTTAGCAGGATGCCATGACAACCAGGCAATGCTGGATAAATACAGAATCCTTATCACAAAG
Seq A exon
GACTCTGCACAGGAGAGTGTTATTACTCGAGACATTCATCGTACATTTCCTGCACACGATTACTTCAAAGACACTGGAGGAGATGGTCAGGAATCTCTTTACAAGATCTGCAAG
Seq C2 exon
GCATACTCCGTGTATGATGAAGACATCGGGTACTGTCAAGGACAGTCTTTTCTTGCTGCTGTACTACTGTTGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002736-'26-42,'26-39,31-42
Average complexity
S
Mappability confidence:
93%=88=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PU(14.2=56.9)
A:
PF0056613=RabGAP-TBC=FE(18.1=100)
C2:
PF0056613=RabGAP-TBC=FE(11.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCATAATAACCTTAATGCCCGACC
R:
ATGCAACAGTAGTACAGCAGCA
Band lengths:
226-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]