MmuEX0038430 @ mm9
Exon Skipping
Gene
ENSMUSG00000026721 | Rabgap1l
Description
RAB GTPase activating protein 1-like [Source:MGI Symbol;Acc:MGI:1352507]
Coordinates
chr1:162383882-162557496:-
Coord C1 exon
chr1:162557346-162557496
Coord A exon
chr1:162402129-162402242
Coord C2 exon
chr1:162383882-162383956
Length
114 bp
Sequences
Splice sites
3' ss Seq
CTGGATCTTTTTTCTTTTAGGAC
3' ss Score
10.51
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
GCACAATAACCTTGGTGGCCGACCAAAAGGACTATTCACCTTGGTAAAGAGTGGTGTTCCTGAGGCACTAAGGGCAGAAGTATGGCAACTATTAGCAGGATGCCATGACAATCAGGAAATGCTGGATAAATACCGAATCCTTATCACAAAG
Seq A exon
GACTCTGCACAGGAGAGTGTTATTACTCGAGATATTCATCGTACATTTCCTGCACACGATTACTTCAAAGACACTGGAGGCGATGGTCAAGAATCCCTTTACAAAATCTGCAAG
Seq C2 exon
GCCTACTCGGTGTTCGATGAAGACATTGGGTACTGTCAAGGACAGTCTTTTCTTGCTGCTGTACTACTGTTGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026721-'16-21,'16-20,19-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PU(14.2=56.9)
A:
PF0056613=RabGAP-TBC=FE(18.1=100)
C2:
PF0056613=RabGAP-TBC=FE(11.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAATAACCTTGGTGGCCG
R:
ATGCAACAGTAGTACAGCAGCA
Band lengths:
226-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: