GgaEX1047865 @ galGal4
Exon Skipping
Gene
ENSGALG00000006271 | RACGAP1
Description
Rac GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:9804]
Coordinates
chrLGE22C19W28_E50C23:338049-339012:+
Coord C1 exon
chrLGE22C19W28_E50C23:338049-338118
Coord A exon
chrLGE22C19W28_E50C23:338319-338372
Coord C2 exon
chrLGE22C19W28_E50C23:338935-339012
Length
54 bp
Sequences
Splice sites
3' ss Seq
GTGCTGAATGTTTTCCTCAGGAC
3' ss Score
7.99
5' ss Seq
AGGGTATGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
ACTGTCTACAATAGATGAATCTGGCTCAATTCTGTCAGACATCAGCTTTGACAAGACTGATGATTCACTG
Seq A exon
GACTGGGATTCCTCTGCGGTGAAGGCTGTCAGACTGAAGAGGAGAGAGAAGAGG
Seq C2 exon
CGCTCTTCCAGGCAGTATGTTGAAGGCCCACCAGCTCCTGAGAAGAAAATCCGATCAATTGGTTCCACGGCAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006271-'18-7,'18-6,20-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=0.222 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATCTGGCTCAATTCTGTCAGA
R:
CTGATCTGCCGTGGAACCAAT
Band lengths:
133-187
Functional annotations
There are 2 annotated functions for this event
PMID: 19468300
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: alanine scanning, mutation analysis, protein kinase assay. ELM ID: ELMI003371; ELM sequence: WDSSLVK; Overlap: FULL
PMID: 19468302
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: alanine scanning, fluorescence technology, mutation analysis, mutation disrupting interaction, protein kinase assay, western blot. ELM ID: ELMI003371; ELM sequence: WDSSLVK; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]