GgaEX1048243 @ galGal4
Exon Skipping
Gene
ENSGALG00000006348 | RAPGEF3
Description
Rap guanine nucleotide exchange factor (GEF) 3 [Source:HGNC Symbol;Acc:HGNC:16629]
Coordinates
chrLGE22C19W28_E50C23:433094-433676:+
Coord C1 exon
chrLGE22C19W28_E50C23:433094-433200
Coord A exon
chrLGE22C19W28_E50C23:433304-433425
Coord C2 exon
chrLGE22C19W28_E50C23:433502-433676
Length
122 bp
Sequences
Splice sites
3' ss Seq
ACGCTTCCCTCTCTTTGCAGGAG
3' ss Score
12.43
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
Exon sequences
Seq C1 exon
GCATCCTCGGAGAAGATCTGGAGAGCTGGAAAGCTCCTCTTCACCTACCTCACCAGCACCAGCCCCAGCCTCATCCGGGACCACAAGCATCACCTGCGGCACCACAG
Seq A exon
GAGGTGCTGCTCCGGGAAGGAGCTGGTGGACTGGATGCTGAATGCAGAGCTGGGCATCCAGACGCGAAGCCAAGCCATCGGCGTGGGGCAGGTGCTGGTGGACGGCGGGGTCCTGACGCACG
Seq C2 exon
TGAAACAGGAGTGGCATTTCCAGGACAAGGACACCCAGTTCTATCGCTTTGCTGAGTTGGAGCTGAGCCCTGAGCCCCGCGTGGGGCTGCGGGATGCGGAGGAGCTGCTGGAGGCGGTGACCTTCCTGGCACAGCTGGGGCCCGATGCGCTGCTCACCATGGCCCTGCGCAAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006348-'9-5,'9-4,12-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
PF0061016=DEP=PU(18.3=36.1)
A:
PF0061016=DEP=FE(57.7=100)
C2:
PF0061016=DEP=PD(22.5=27.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAAAGCTCCTCTTCACC
R:
CCATGGTGAGCAGCGCATC
Band lengths:
245-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]