MmuEX0038791 @ mm10
Exon Skipping
Gene
ENSMUSG00000022469 | Rapgef3
Description
Rap guanine nucleotide exchange factor (GEF) 3 [Source:MGI Symbol;Acc:MGI:2441741]
Coordinates
chr15:97760579-97761581:-
Coord C1 exon
chr15:97761475-97761581
Coord A exon
chr15:97761108-97761229
Coord C2 exon
chr15:97760579-97760747
Length
122 bp
Sequences
Splice sites
3' ss Seq
CCCCCTGCCATTCCCCACAGGCA
3' ss Score
12.35
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
GCCACCACAGAGCATGTGCACAAGGCAGGGAAGCTCCTGCACCGCCATCTCTTGGCCACGTACCCTACCCTCATCCGAGACAGAAAATACCATCTGCGACTATATCG
Seq A exon
GCATTGCTGCTCTGGCCGGGAGCTAGTGGATGGGATCTTGGCTCTGGGGCTTGGGGTCCACTCACGGAGCCAAGCCGTGGGCATCTGCCAAGTGTTGCTGGATGAGGGTGCCCTTTGTCATG
Seq C2 exon
TAAAACATGACTGGACCTTCCAGGACCGAGATGCCCAATTCTACAGGTTCCCTGGACCGGAGCCCGAGCCTACAGGAACTCAAGATGTGGAAGAGGAGCTTGTTGAGGCTATGGCCCTCCTGTCCCAGCGAGGGCCTGATGCCCTACTCACCGTGGCGCTCCGGAAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022469_MULTIEX1-4/18=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.327
Domain overlap (PFAM):
C1:
PF0061016=DEP=PU(18.3=36.1)
A:
PF0061016=DEP=FE(57.7=100)
C2:
PF0061016=DEP=PD(22.5=28.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGCATGTGCACAAGGC
R:
ACGGTGAGTAGGGCATCAGG
Band lengths:
255-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types