DreEX0007297 @ danRer10
Exon Skipping
Gene
ENSDARG00000075924 | RAPGEF4 (1 of 2)
Description
Rap guanine nucleotide exchange factor (GEF) 4 [Source:HGNC Symbol;Acc:HGNC:16626]
Coordinates
chr6:6739488-6743636:+
Coord C1 exon
chr6:6739488-6739594
Coord A exon
chr6:6740725-6740846
Coord C2 exon
chr6:6743453-6743636
Length
122 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGTTTGCAGGCA
3' ss Score
10.36
5' ss Seq
ACGGTACAC
5' ss Score
5.08
Exon sequences
Seq C1 exon
GTGCCGTCAGAAAAGATTTTGAGGGCAGAAAAAGTGTTACGTAATGCAATACTGGCCAGAGCTCCCCACATGATCAGAGACAGAAAATATCATCTGAAAACATACAG
Seq A exon
GCAGTGTTGTGTGGGCACTGAGCTGGTGGACTGGTTGCTTCAGCAGAGCTCATGTGTTCACAGTCGGGCTCATGCTGTGGGAATGTGGCAGGTGCTGCTGGAGGAAGGAGTTCTGAATCACG
Seq C2 exon
TCGACCATGAACTCAACTTTCAAGATAAGTACCTCTTTTACCGTTTCCTCGACGATGAGGAGGAGGATGCGGTGTTGCCTAGCGACGATGAGAAACGCGAAGCTGAGGAAGAGCTGCAGGAGACACTCCTCTTCCTCTCTCAGATTGGCCCTGACGCGCACATGCGCATGATCCTCAGGAAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075924-'8-11,'8-9,9-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.145
Domain overlap (PFAM):
C1:
PF0061016=DEP=PU(19.7=38.9)
A:
PF0061016=DEP=FE(57.7=100)
C2:
PF0061016=DEP=PD(21.1=24.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCAATACTGGCCAGAGCTC
R:
GTTTCCTGAGGATCATGCGCA
Band lengths:
247-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]