GgaEX6042284 @ galGal3
Exon Skipping
Gene
ENSGALG00000009357 | RAPGEF4
Description
NA
Coordinates
chr7:18815040-18818538:-
Coord C1 exon
chr7:18818432-18818538
Coord A exon
chr7:18816480-18816601
Coord C2 exon
chr7:18815040-18815223
Length
122 bp
Sequences
Splice sites
3' ss Seq
TCTGTTCATTTGTCCTTCAGGCA
3' ss Score
9.63
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GTTCCTTCAGAAAAGATCCTCAGAGCTGGAAAGATTTTGCGGAATACAATTCTGTCCCGAGCCCCTCACATGATAAGAGATCGTAAATATCATCTGAAGACTTACAG
Seq A exon
GCAGTGCTGTGTGGGAACAGAACTTGTTGACTGGATGATGCAGCAAAGTACTTGTGTCCATTCACGAAGTCAGGCTGTTGGCATGTGGCAAGTATTGCTGGAAGAAGGTGTTCTTAACCATG
Seq C2 exon
TGGACCAGGAACACCACTTTCAGGACAAATACTTATTTTATCGATTTTTGGATGATGAGCGTGAAGATGCCCCTTTGCCAACAGAGGAAGAGAAAAAGGAGTGTGATGAGGAGCTACAGGACACTATGCTGCTTCTGTCCCAGATTGGGCCAGATGCTCATATGAGGATGATTCTCAGAAAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009357-'15-17,'15-15,16-17=AN
Average complexity
A_S
Mappability confidence:
89%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=0.000 C2=0.194
Domain overlap (PFAM):
C1:
PF0061016=DEP=PU(19.7=38.9)
A:
PF0061016=DEP=FE(57.7=100)
C2:
PF0061016=DEP=PD(21.1=24.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCTGGAAAGATTTTGCGGA
R:
ATGAGCATCTGGCCCAATCTG
Band lengths:
247-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]