RnoEX6033806 @ rn6
Exon Skipping
Gene
ENSRNOG00000059961 | Rapgef3
Description
Rap guanine nucleotide exchange factor 3 [Source:RGD Symbol;Acc:621869]
Coordinates
chr7:139247430-139248374:-
Coord C1 exon
chr7:139248268-139248374
Coord A exon
chr7:139247973-139248094
Coord C2 exon
chr7:139247430-139247598
Length
122 bp
Sequences
Splice sites
3' ss Seq
CCCCCTTGCATTTCCCACAGGCA
3' ss Score
11.88
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
GCCACCACAGAGCATGTGCACAAGGCCGGGAAGCTCCTGTACCGTCATCTCTTGGCAACGTACCCTACCCTCATCCGAGACAGAAAATACCATCTGCGACTACATCG
Seq A exon
GCAGTGCTGCTCTGGCCGGGAGCTAGTGGATGGGATCTTGGCTCTGGGTCTTGGGGTCCACTCACGGAGCCAAGCTGTGGGCATCTGCCAGGTGTTGCTGGATGAGGGTGCCCTTTGCCATG
Seq C2 exon
TAAAACATGACTGGACCTTCCAGGACCGAGACGCCCAATTCTACAGATTCCCTGGACCGGAGCCCCAGCCTGCAGGAACTCATGACGTGGAAGAGGAGCTTGTTGAGGCAATGGCCCTACTCTCCCAGCGAGGGCCTGATGCCCTACTCACTGTTGCACTCCGGAAGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059961-'9-14,'9-12,11-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.228
Domain overlap (PFAM):
C1:
PF0061016=DEP=PU(18.3=36.1)
A:
PF0061016=DEP=FE(57.7=100)
C2:
PF0061016=DEP=PD(22.5=28.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAAGCTCCTGTACCGTCAT
R:
TCCGGAGTGCAACAGTGAGTA
Band lengths:
245-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]